Hi Keith,
I just added the option -disable-scaffolder for you.
If you fetch ray and RayPlatform with git, you will gain access to all these
new options which are useful to tune resource usage by the software:
-disable-scaffolder
Disables the scaffolder.
-disable-network-test
Skips the network test.
-bloom-filter-bits bits
Sets the number of bits for the Bloom filter
Default is 268435456 bits, 0 bits disables the Bloom filter.
-hash-table-buckets buckets
Sets the initial number of buckets. Must be a power of 2 !
Default value: 268435456
-hash-table-buckets-per-group buckets
Sets the number of buckets per group for sparse storage
Default value: 64, Must be between >=1 and <= 64
-hash-table-load-factor-threshold threshold
Sets the load factor threshold for real-time resizing
Default value: 0.75, must be >= 0.5 and < 1
-hash-table-verbosity
Activates verbosity for the distributed storage engine
-enable-neighbourhoods
Computes contig neighborhoods in the de Bruijn graph
Output file: RayOutput/NeighbourhoodRelations.txt
-connection-type type (with -route-messages)
new model !
hypercube: a hypercube, alphabet is {0,1} and the vertices is a
power of 2
Ray v2.1.0 should ship by mid September and will include these changes.
Sébastien Boisvert
Keith Robison a écrit :
> Warp Drive Bio
------------------------------------------------------------------------------
Live Security Virtual Conference
Exclusive live event will cover all the ways today's security and
threat landscape has changed and how IT managers can respond. Discussions
will include endpoint security, mobile security and the latest in malware
threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
_______________________________________________
Denovoassembler-users mailing list
Denovoassembler-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
