Hi Ray group, I am using Ray to assembly our sequencing data. As some of the reads mis-assembled onto our final scaffolds and we have many low coverage contigs hanging around, I am curious if there is a flag to eliminate the contigs with low coverage such as 5 or 10. ( I know Ray has a flag to set the limit length of contig). In addition, is there a cut off for kmer as well, so that low kmer coverage will be eliminated at early stage of assembly?
Thanks. Best, Peter ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
