What's the last thing reported in stdout ? On 02/22/2013 06:23 AM, jjv5 wrote: > Hello, > > I am running ray meta on a shared memory machine with 40 cores and 1TB > memory. One very small job with 25K reads finished and gave various > taxonomic outputs. Jobs with slightly > more input seem to never finish. The output log just stops but there > are no errors indicated. Where might one start to look to determine > where a job has gone wrong? > > The command I use is below. There are 100,000 paired reads. > > mpiexec -n 40 $RAY -o $OUTDIR -p $LEFT $RIGHT -k 31 \ > -search $NCBIDIR/NCBI-Finished-Bacterial-Genomes \ > -with-taxonomy $NCBIDIR/Genome-to-Taxon.tsv > $NCBIDIR/TreeOfLife-Edges.tsv $NCBIDIR/Taxon-Names.tsv > > ------------------------------------------------------------------------------ > Everyone hates slow websites. So do we. > Make your web apps faster with AppDynamics > Download AppDynamics Lite for free today: > http://p.sf.net/sfu/appdyn_d2d_feb > _______________________________________________ > Denovoassembler-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/denovoassembler-users >
------------------------------------------------------------------------------ Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_d2d_feb _______________________________________________ Denovoassembler-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
