Hello, I am running ray meta on a shared memory machine with 40 cores and 1TB memory. One very small job with 25K reads finished and gave various taxonomic outputs. Jobs with slightly more input seem to never finish. The output log just stops but there are no errors indicated. Where might one start to look to determine where a job has gone wrong?
The command I use is below. There are 100,000 paired reads. mpiexec -n 40 $RAY -o $OUTDIR -p $LEFT $RIGHT -k 31 \ -search $NCBIDIR/NCBI-Finished-Bacterial-Genomes \ -with-taxonomy $NCBIDIR/Genome-to-Taxon.tsv $NCBIDIR/TreeOfLife-Edges.tsv $NCBIDIR/Taxon-Names.tsv ------------------------------------------------------------------------------ Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_d2d_feb _______________________________________________ Denovoassembler-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
