Hi Sebastien, I would like to run a large job and when I read the ray documentation some points are not clear to me, probably due to my lack of MPI/graph knowledge. I was planing to use the polytope connection type, and I want to estimate which vertice and degree I should pass to ray. In the explanation you gave in the documentation you explain how to calcultate these two values: vertices:= alphabetSize^wordLength degree:= (alphabetSize-1)*wordLength
what I don't understand is what alphabetSize and wordlength represents ? I already have an estimation of what the maximum vertice I could reach based on the reasonnable number of core*cpu I could ask to do not stay in queue for to long. For information I was planning asking 85 cores of 24cpu (in the mamouth HPC) so my number of vertice would be max 2040. can you give me more details or tips on that point ? Thanks in advance Mathieu -- Mathieu Bourgey, PhD Spécialiste Bioinformatique Centre d'innovation Génome Québec ------------------------------------------------------------------------------ Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the endpoint security space. For insight on selecting the right partner to tackle endpoint security challenges, access the full report. http://p.sf.net/sfu/symantec-dev2dev _______________________________________________ Denovoassembler-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
