On 29/05/13 05:49 PM, Lutz Froenicke wrote: > Dear Sebastien, > > what would you consider the longest read length which could be usable as > input for RAY assembler? > We have both regular Illumina PE and MP reads and Moleculo long reads for a > 1.5 Gb plant genome. > Since the Moleculo data have seem to have some biases against specific > repeats a mere overlap assembly does not help too much. > > Thanks a lot for any advice, > Lutz
The maximum read length accepted by Ray is 65536 nucleotides. ------------------------------------------------------------------------------ Introducing AppDynamics Lite, a free troubleshooting tool for Java/.NET Get 100% visibility into your production application - at no cost. Code-level diagnostics for performance bottlenecks with <2% overhead Download for free and get started troubleshooting in minutes. http://p.sf.net/sfu/appdyn_d2d_ap1 _______________________________________________ Denovoassembler-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
