On 31 May 2013 05:09, Sébastien Boisvert <[email protected]> wrote: >> what would you consider the longest read length which could be usable as >> input for RAY assembler? >> We have both regular Illumina PE and MP reads and Moleculo long reads for a >> 1.5 Gb plant genome. >> Since the Moleculo data have seem to have some biases against specific >> repeats a mere overlap assembly does >> not help too much. > The maximum read length accepted by Ray is 65536 nucleotides.
But bear in mind that the kmer length (rather than read length) is more likely to be an issue here with large repeat structures. - David ------------------------------------------------------------------------------ Introducing AppDynamics Lite, a free troubleshooting tool for Java/.NET Get 100% visibility into your production application - at no cost. Code-level diagnostics for performance bottlenecks with <2% overhead Download for free and get started troubleshooting in minutes. http://p.sf.net/sfu/appdyn_d2d_ap1 _______________________________________________ Denovoassembler-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
