On 27/08/13 08:04 AM, Andrea Thuermer wrote:
> Dear all,
>
> is there any output file in ray, where i can see the % reads that
> aligned within the assembly
For a percentage of reads that were used in the assembly, no.
> or a coverage of the contigs?
You can obtain the k-mer coverage depth at each position of every contig by
using these files
that are automatically generated:
RayMicrobiomeAnalysis/
BiologicalAbundances/
_DenovoAssembly/
Contigs.tsv
*.CoverageData.xml
>
> thanks & best regards
> Andrea
>
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