On 16/10/13 05:24 PM, Tan, Yifang wrote:
> Hi Sebastien:
Hi,
(Please use the list)
>
> Sometime I saw this message during assembly. Do you have any clue about it?
>
> ////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
> 3 : VirtualCommunicator (service provided by VirtualCommunicator): 1356224
> virtual messages generated 1196883 real messages (88.2511%)
> Error: can not add CTCCGTCGTATCTACTTTTCCAAACACTTTTGCCCTTGTTTTGGACTCTAG
> last objects:
> [19244] ------> ATTGGGAGTTGATACGTCTCCGTCGTATCTACTTTTCCAAACACTTTTGCC
> [19245] ------> TTGGGAGTTGATACGTCTCCGTCGTATCTACTTTTCCAAACACTTTTGCCC
> [19246] ------> TGGGAGTTGATACGTCTCCGTCGTATCTACTTTTCCAAACACTTTTGCCCT
> [19247] ------> GGGAGTTGATACGTCTCCGTCGTATCTACTTTTCCAAACACTTTTGCCCTT
> [19248] ------> GGAGTTGATACGTCTCCGTCGTATCTACTTTTCCAAACACTTTTGCCCTTG
> [19249] ------> GAGTTGATACGTCTCCGTCGTATCTACTTTTCCAAACACTTTTGCCCTTGT
> [19250] ------> AGTTGATACGTCTCCGTCGTATCTACTTTTCCAAACACTTTTGCCCTTGTT
> [19251] ------> GTTGATACGTCTCCGTCGTATCTACTTTTCCAAACACTTTTGCCCTTGTTT
> [19252] ------> TTGATACGTCTCCGTCGTATCTACTTTTCCAAACACTTTTGCCCTTGTTTT
> [19253] ------> TGATACGTCTCCGTCGTATCTACTTTTCCAAACACTTTTGCCCTTGTTTTG
> [19254] ------> GATACGTCTCCGTCGTATCTACTTTTCCAAACACTTTTGCCCTTGTTTTGG
> [19255] ------> ATACGTCTCCGTCGTATCTACTTTTCCAAACACTTTTGCCCTTGTTTTGGA
> [19256] ------> TACGTCTCCGTCGTATCTACTTTTCCAAACACTTTTGCCCTTGTTTTGGAC
> [19257] ------> ACGTCTCCGTCGTATCTACTTTTCCAAACACTTTTGCCCTTGTTTTGGACT
> [19258] ------> CGTCTCCGTCGTATCTACTTTTCCAAACACTTTTGCCCTTGTTTTGGACTC
> [19259] ------> GTCTCCGTCGTATCTACTTTTCCAAACACTTTTGCCCTTGTTTTGGACTCT
If I match the vertex that could not be added with the one at position 19259,
it looks like this:
[19259] ------> GTCTCCGTCGTATCTACTTTTCCAAACACTTTTGCCCTTGTTTTGGACTCT
.................... CTCCGTCGTATCTACTTTTCCAAACACTTTTGCCCTTGTTTTGGACTCTAG
So this looks like a subtle bug where there is an offset of +2 instead of +1.
Which version of Ray are you using ?
> Rank 16 JoinerTaskCreator [18/18]
> ............
>
> ////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
>
> I doubt the error is due to repeat sequence (actually it is a copia-like
> transposon). The result seem OK, but I am not sure any attention should be
> paid.
>
> Thanks!
>
> Yifang
>
> _________________________________________________
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> 110 place Gymnasium, Saskatoon (SK) S7N 0W9
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> yifang....@nrc-cnrc.gc.ca;
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