On 21/10/13 04:57 PM, Gomez, Andres M wrote: > Hi All > I'm running ray on my library (~150 bp read length –interleved illumina pair > end reads) using the following code > > mpiexec -n 32 Ray -k 75 -i Fem_Bowtie_filtered_shuffled.fastq -o Ray_Test_F > > Afetr a while of running I get the following output and error message: > > Step: Sequence loading > Date: Mon Oct 21 15:50:00 2013 > Elapsed time: 1 hours, 34 minutes, 42 seconds > Since beginning: 1 hours, 47 minutes, 42 seconds > *** > > > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686981400 bytes for table with 5495851200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > [BloomFilter] allocated 686978400 bytes for table with 5495827200 bits > Bus error
A bus error is usually something related to the alignment of addresses. What computer architecture are you using (Itanium ?) ? Also, how many cores do you have at your disposal to run this ? > -system-specific-4.1$ > > > Any help will be highly appreciated > > --------------------------------------------------------------------------------- > Andres Gomez > Institute for Genomic Biology > Animal Science Department > University of Illinois at Urbana-Champaign > amgo...@illinois.edu > /Office//+1 217 /333 7958 > /Cell +1 217 418 0438/ > / > / > / > / ------------------------------------------------------------------------------ October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register > http://pubads.g.doubleclick.net/gampad/clk?id=60135991&iu=/4140/ostg.clktrk _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
