Hello,
The command was 

mpiexec --hostfile /home/openmpi-1.6.5/hosts.txt Ray -s 
navy/XXXX_Meta_Small.fastq -o /home/rayOutputMPI_again/ -search 
scripts/NCBI-Taxonomy/NCBI-taxonomy/NCBI-Finished-Bacterial-Genomes/ 
-with-taxonomy scripts/NCBI-Taxonomy/NCBI-taxonomy/Genome-to-Taxon.tsv 
scripts/NCBI-Taxonomy/NCBI-taxonomy/TreeOfLife-Edges.tsv 
scripts/NCBI-Taxonomy/Tax NCBI-taxonomy/Taxon-Names.tsv

Thanks,
-Robert

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