On 08/11/13 03:02 PM, Tyx, Robert (CDC/ONDIEH/NCEH) wrote: > Hello, > The command was > > mpiexec --hostfile /home/openmpi-1.6.5/hosts.txt Ray -s > navy/XXXX_Meta_Small.fastq -o /home/rayOutputMPI_again/ >-search scripts/NCBI-Taxonomy/NCBI-taxonomy/NCBI-Finished-Bacterial-Genomes/ >-with-taxonomy scripts/NCBI-Taxonomy/NCBI-taxonomy/Genome-to-Taxon.tsv >scripts/NCBI-Taxonomy/NCBI-taxonomy/TreeOfLife-Edges.tsv >scripts/NCBI-Taxonomy/Tax NCBI-taxonomy/Taxon-Names.tsv
I don't see the number of MPI ranks in your command. Are you running your test on one single computing core ? /home/rayOutputMPI_again/ is inside /home. Does the user that run Ray have the rights to create that directory? > > Thanks, > -Robert > ------------------------------------------------------------------------------ November Webinars for C, C++, Fortran Developers Accelerate application performance with scalable programming models. Explore techniques for threading, error checking, porting, and tuning. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60136231&iu=/4140/ostg.clktrk _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
