You need to recompile Ray with MAXKMERLENGTH=something larger than 32.
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> From: eforoo...@nigeb.ac.ir
> To: sebastien.boisver...@ulaval.ca
> Date: Thu, 21 Aug 2014 05:30:58 -0400
> Subject: Ray assembler
>
>
> hello dear Sébastien,
> I am a phd student and I'm trying to assemble a bacterial genome (illumina
> reads) using Ray and soapdenovo. But I get a confusing result from Ray. I
> mean I run Ray on my data with different k parameter(31 51 75) but the result
> is almost identical! Is this OK with Ray?
> Here is my command line
>
> mpiexec -n 10 Ray -p Serratia_marcescens_450_10_71.fq
> Serratia_marcescens_450_10_72.fq -o Serratia_marcescens_450_10_7_k31 -k 31
>
> thanks in advance and best regards
> esmail foroozan
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