Hi Sebastien,
It is actually one node with ~350 CPUS (Xeons).
The node has a total of 2TB RAM
Thank you, Sheerli
________________________________
From: Sébastien Boisvert <sebastien.boisver...@ulaval.ca>
To: sheerli kruger <sheer...@yahoo.com>;
"denovoassembler-users@lists.sourceforge.net"
<denovoassembler-users@lists.sourceforge.net>
Sent: Friday, December 13, 2013 4:05 PM
Subject: Re: [Denovoassembler-users] Running meta ray
On 11/12/13 05:44 PM, sheerli kruger wrote:
> Hi Sebastien,
> We will be using approximately 350 computing nodes.
> Thank you,
How many cores per node do you have ?
> Sheerli
>
>
>
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
------------------------
> *From:* Sébastien Boisvert <sebastien.boisver...@ulaval.ca>
> *To:* sheerli kruger <sheer...@yahoo.com>
> *Cc:* "denovoassembler-users@lists.sourceforge.net"
> <denovoassembler-users@lists.sourceforge.net>
> *Sent:* Wednesday, December 11, 2013 6:32 PM
> *Subject:* Re: [Denovoassembler-users] Running meta ray
>
> On 11/12/13 03:11 AM, sheerli kruger wrote:
>
> > Dear mailing list,
> > I have a metagenome of about 2.5B reads of 150 length. If I choose to use
>the meta ray assembler, what would be the parameters that could influence the
>running time and computational resources (assuming the genomes comprising the
>metagenomes follow power law)?
> > Is there a log in which I can monitor the progress of my job?
> > Tank you very much,
> > Sheerli
>
> >
>
> How many compute nodes will you use to assemble 2 500 000 000 reads ?
>
>
>
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