On 25 janvier 2014 13:18, Adrian Platts [plat...@sbcglobal.net] wrote: > À : Sébastien Boisvert > Objet : Re: [Denovoassembler-users] assembly of simulated data > > Hey Seb > > 8Kb is also the peak length for Illumino Moleculo psuedo-reads - so these may > not be noisy reads ... although Moleculo reads would have their own issues > and biases. > Maybe Peter will expand on his context.
Right. Peter: are you using PacBio, Moleculo, or Oxford Nanopore ? > > Adrian > VEGI Project > McGill > > On Jan 25, 2014, at 1:03 PM, Sébastien Boisvert > <sebastien.boisver...@ulaval.ca> wrote: > >> >> On 24 janvier 2014 11:03, Peter Huang [peter.hu...@vinelandresearch.com] >> wrote: >>> À : Denovoassembler-users@lists.sourceforge.net >>> Objet : [Denovoassembler-users] assembly of simulated data >>> >>> Dear Ray, >>> >>> I am currently trying to assembly some really long reads: average read >>> length ~8000 bp. I tried to used Ray, but it kind of hanged me for 2 days >>> without any results. I am curious if it is possible for Ray to do this job. >>> Thanks. >> >> >> Ray is not designed to handle long noisy reads (ex.: PacBio) because Ray >> does not correct reads. >> >> Maybe that has something to do will your long running time. >> >> >>> >>> Best, >>> >>> Peter >>> >>> PS, please let me know if you need my output file as I saved it on the >>> disk. But it is quite large. Thanks. >> >> ------------------------------------------------------------------------------ >> CenturyLink Cloud: The Leader in Enterprise Cloud Services. >> Learn Why More Businesses Are Choosing CenturyLink Cloud For >> Critical Workloads, Development Environments & Everything In Between. >> Get a Quote or Start a Free Trial Today. >> http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk >> _______________________________________________ >> Denovoassembler-users mailing list >> Denovoassembler-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/denovoassembler-users > ------------------------------------------------------------------------------ CenturyLink Cloud: The Leader in Enterprise Cloud Services. Learn Why More Businesses Are Choosing CenturyLink Cloud For Critical Workloads, Development Environments & Everything In Between. Get a Quote or Start a Free Trial Today. http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
