I have the slight feeling that this is still related to that problem, when ray crashed if you assigned a prime number of cores to MPI. e.g. I can only run ray with a kmer-value of 125, if I use at least 9 cores. It runs on 6 cores if I take e.g. 49. No clue what the problem is. tl;dr: Try assigning more or less cores, maybe that changes something. ________________________________________ From: Miller, Ruth [ruth.mil...@bccdc.ca] Sent: Wednesday, January 29, 2014 11:51 PM To: Sébastien Boisvert; denovoassembler-users@lists.sourceforge.net Subject: Re: [Denovoassembler-users] RE : Segmentation fault with -k 31
Hi, I have copied in the top 100 lines of my input file below. However, I do think the problem is something to do with -k 31, as the following command: "mpiexec -n 80 /global/software/ray/ray230/Ray -i HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq -o test4" just finished successfully on the same file. Thanks, Ruth ---- @HWI-ST521:180:D2B4AACXX:4:1101:1236:1171 1:N:0:CCGTCC:B CCTCCTCTCCTGGGTCCCCAGGAGAGGAGGCTACATGCACAGACAGGACCCCTCTCTGCCCTTAAGCCATGCTCT GGTGGGTGACAGACTCAGAAAG + ?@@DDD?AAFDHHD@FHIIIEIHG;;@EDD)?D@B@FBGGIGIGI@D=8BFHHE>C@@@CCAEDC@CDD>@@EEA CA@C??;=<:@CC?>ACCC:@C @HWI-ST521:180:D2B4AACXX:4:1101:1236:1171 2:N:0:CCGTCC:B GCTGGTGTGATGGATGGGAGTGGGACATGTTATAGACTCCTGTTTCTTGTGGTCCTACTGTGTGCTGGTACCCTC ATCTGGGGACATGTAGTGAGTGG + @@CFFADAFDHHHFIIIJ>FEBFHGGG>FFICH@>?BGHI@GBGIJJIHBEDFGGCEGIGDGFCF@:CDCHACHH E>CBEF9BCC?@@5>A(:@>:>? @HWI-ST521:180:D2B4AACXX:4:1101:1200:1175 1:N:0:CCGTCC:B GAATATACTTAACACTACTGAGCTGTGCACTTTAAAAATGGTTCAGATGGTAAATTTTGTGGTGCCTGATTATTA TTATTTTTTTTAG + ?<<DFFDDFFHD<@EDHBGG>G9FB?C?@A4FCBBFEGII9?CGHI<GHI:?BFE<@FH?FHHG4==C@DGFGEH DAEH4=?>BA?AC @HWI-ST521:180:D2B4AACXX:4:1101:1200:1175 2:N:0:CCGTCC: GCTGGGAGCTGTAGTGTAGTTCGCAGACACAGCGTGGATCTGGTGTTGCTGTGGCTGTGGTGTAGGCCAGCAACT GTAGCTCTGATTTGACCCCTAGCCT + B;BDDDDDHFHACGGHGCFHHGF<FGBHGCBF=@FHH?<9?@FBF.6=C@FHEGGA@==ACCD@@B).6;??CBC CCDC:5::CC@@CCA5,2(<@C393 @HWI-ST521:180:D2B4AACXX:4:1101:1146:1210 1:N:0:CCGTCC: GCGTCTGATGCCGACGCTCATCAGACCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATGGAA GTCGGAATCCGCTAAGGAGTGTGTA + B@@FFDFFHHHHHGIGII:FHGIHHCDHHIIGGGIGG=B<FGH;FHEHGIHFEHEHDDFFCDDD3<@B2>::CCC CCCDDBBD::9@BDDC?CA?<>>?C @HWI-ST521:180:D2B4AACXX:4:1101:1146:1210 2:N:0:CCGTCC: GTCCCTCTCGCGCGCTGCTCCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCCAGCGCCATCCATTTTCA GGGCTAGTTGATTCGGCAGGTGAGT + B@=DDEDFHHHHAGGIIJBHHIIJJ8)BGG8AD?CBBDDD-)0>88<?BB7@D<BD8BCDCBDDBD?BCC:>CDC A@<@BDD::@CCC@?A9@>@1>>8> @HWI-ST521:180:D2B4AACXX:4:1101:1099:1216 1:N:0:CCGTCC:B ACTTTCAATAGATCGCAGCGAGGGAGCTGCTCTGCTACGTACGAAACCCCGACCCAGAAGCAGGTCGTCTACGAA TGGTTTAGCATCAGGTT + @@@DDDFFGAFHFDGHBE@@@FBE6:)?DBFFDBBH<8D?=CGGGEBAGEHFFB85?A>?CCCC9:;88ABCB;8 <>CCCBCA(((+:@CCC @HWI-ST521:180:D2B4AACXX:4:1101:1099:1216 2:N:0:CCGTCC:B CGTCCCTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAACCGCGGTCCTATTCCATTATTCCTAGCT GC + 1==D+@AD?DFHD<?ABBFCE>FHACAFE<F@GBD3??;BDHICFGD<CB/@<5AB7BCBB366>@3@CD@@CCA CD @HWI-ST521:180:D2B4AACXX:4:1101:1491:1111 1:N:0:CCGTCC: CCGCACTTGTGACATATGGAAGTTCCCAGGCTAGGGGTTCAATCAGAGCTGCAGCTGCCGGCCTACCTCACAGCC ACAGAAATTCCAGATCTGAGCCACA + ?@@DDFFFHHHFFEHCHHIHEIGHEHGGHIIIGHJIJ@F?9BBGDH@HEFHBFFGGIHCHGHFFBEEECCCACA= ?CADCDDDD@ADCCDCDDDDD?CCD @HWI-ST521:180:D2B4AACXX:4:1101:1491:1111 2:N:0:CCGTCC: GGCTCAGCAGAAACAAATCTGACAAGTATCCATGAGGACAAAGGTTCGATCCCTGGCCTTGCTCAGTGGGTTTAG GACTCGGCATGGCTGTGAGCTGTGG + CCCFFFFFHHHHGJGIIJIJJCGGIJHCEHFGHIIIIEHCDEFGGIBGHGFGHHIICGHIIJIEGH@DCH:ABDB BDD>CB?=@>9ABCB?C@CDCDCCC @HWI-ST521:180:D2B4AACXX:4:1101:1446:1133 1:N:0:CCGTCC: TGTGGGGCGGGCCCGGCCGGGGGTATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGAC CAGAGCGAAAGCATTTGCCAAGAAT + CCBFFFFFHHHHHHHE<ABDDDD67CC8<?CDDD@@0::9BBBACDCDCCCDDCDEDD>>CDB7B;BBBCCDD>@ @ABBB399>>BCCCDDEACDCDDDC @HWI-ST521:180:D2B4AACXX:4:1101:1446:1133 2:N:0:CCGTCC: CATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAA CATTCTTGGCAAATGCTTTCGCTCT + C@CFFFFFGHHHFHIIIJIIGHIIJJIGGJIIJIJHHHIJJIIGJHIHHHEFFDDECBBDBDDDDDCDDEDDCDC DDDDDEEDDCCDDDDCDDAC?BBBB @HWI-ST521:180:D2B4AACXX:4:1101:1269:1134 1:N:0:CCGTCC: AGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGA AAACATTCTTGGCAAATGCTTTCGC + <@B=DDADFHHHHJJFECGCEGGE?EFHGIFHADDG@A=BB=FGCEEHGEHFFBA6>?CCBADBBCDACDDCDDC CAAABCC:@@>CA>>AC@>CDDCD< @HWI-ST521:180:D2B4AACXX:4:1101:1269:1134 2:N:0:CCGTCC: CGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACC GGCGCAAGACGGACCAGAGCGAAAG + ?@<DDDDEDGH;<CGHFHIGGIJIJIF;FH:DFGHGD;@?C(>?CDCDC?=B<8BBBCDBABCDCDA>CCCCC>A @B@BB9&5?A><59@?BBB(5509@ @HWI-ST521:180:D2B4AACXX:4:1101:1410:1138 1:N:0:CCGTCC: CCTAGTGCAATGGTGATGGATAGTGCTTGGATTATGTGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCG GGGGCATTCGTATTGCGCCGCTAGA + @@@DADDDFFFHDCFBHHI@HCDAAFFHBEAFHDFGCDFEFHIGGCBE<GHGICDACGGHIGIEGHIDIHEBBB@ 8;@BBBCCCDCCCCCC<3<<B<99: @HWI-ST521:180:D2B4AACXX:4:1101:1410:1138 2:N:0:CCGTCC:B GTCGGTATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTATTCGAACCTCCGACTTTCGTTCTTGATTAAT GAAAACATTCTTGGCAAATG + ==+AD@DB:CFHHGHIIEH?FEHHIE?DE<FG?@;CGBFGFAF2=CDHGCEHB;?BB9>=ACD?C<@CCCCCCAC ((4>C3?ACCDD:>CAA<AC @HWI-ST521:180:D2B4AACXX:4:1101:1296:1143 1:N:0:CCGTCC:B TCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATG AAAACATTCTTGGCAAATGCT + @@@D:8ADACFDDGIIBGGBGF:E>C8CGFF7B;8=BFEFBFIIICAECFB@D;9=8?@3@B?A?BBB(>>@>A@ :>:4(24:>:@3:3>@1>AAB @HWI-ST521:180:D2B4AACXX:4:1101:1296:1143 2:N:0:CCGTCC: GACCAGAGAGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGA TACCGTCGTAGTTCCGACCATAAAC + :11A?DAD+ABHHB+AAGB94ECFGFEGH:CEH9EHGIG<:99BF>:@@CGGDGHH@FB5;=ABDF<CAA?2;AC >@@C=@=@)+22(+4<-)9@>@C<> @HWI-ST521:180:D2B4AACXX:4:1101:1442:1171 1:N:0:CCGTCC: TGGGAGAGCGGTCGTGGAGAGAGGAGCCCTCCAGGGAAGCTGGAAGTTCTTGGGAGGTGGAGGAGATGGACAGAG GTTCCGAATCGCCCCAGCTTGGGAG + @@@FDFDFHDHFHGDFHEF:D8BGEDDGGHGIFCBF<@CCCHGGCGEEHEEEFF(?A;A@BBB8?9CCCCCCCCC BCBC:99@BBBC>BBB@?>C???B? @HWI-ST521:180:D2B4AACXX:4:1101:1442:1171 2:N:0:CCGTCC: TGCCCTGAGCTGTGCTGTAGGTTGCAGATGCGGCTCAGATCAGGGCAACATCAGATCTTTAACCCACTGAGTGAA GTGGGTTGGACCTGCATCCTCATGG + ;?@FDDEDAFHHFHGIIEHHI?HHGIHJ<AFBE)BBBFG<FHIFI=?FFHHIGAGGCAEEDA77AH?@D@D?@CE C@AC;B;/25,5(5<?C4>@>@@CC @HWI-ST521:180:D2B4AACXX:4:1101:1358:1215 1:N:0:CCGTCC: TGGTTGGAAAGAAATGGGCTACATTTTCTACATAAGAATAACCACCATACGAAAGTTTTTATGAAACTAAAAACC AAAGGAGGATTTAGCAGTAAATCAA + @@@AB=DDDBDDA9FGBF:FE+CCHHF>?EFFF?GFFEFG*0BDF=BB<BFD?@F8BFGIIIIID:@DFFCAEBD ;?=@@ACBBBABBB>ABABB@B@BA @HWI-ST521:180:D2B4AACXX:4:1101:1358:1215 2:N:0:CCGTCC: ATGGCCTTATTCAATCAAGCACTCTATTCTTGATTTACTGCTAAATCCTCCTTTGGTTTTTAGTTTCATAAAAAC TTTCGTATGGTGGGTATTCTTATGT + ?@@DDDDFBDF:C@G@FGB>CFGHJEIIHHIIGHIIICEE@G>DFI??FEFFHIGI8BDHGGGHGIJIJGHGGIJ B7@EHAE@@D;?AD;@:ACDDCCCC @HWI-ST521:180:D2B4AACXX:4:1101:1728:1103 1:N:0:CCGTCC: GGCTTGAAAGTGTTAGCTTCCCTATCCCAAGTACTGGTTTTAAAATCACTTAAAACCTTGTTAGAAAAATCTCCC CAAGCCATCAATTGAGAAAGCGTTA + BCCFFFFFHHHHHIHIJIJHIIIIJHIIIIGHJJIJICGGIJJJ@DFGJHJJJJIIJGIGHIIIFHIJJDHHHHG A>ABDFDEEEEEDECA?A?@C@?BD @HWI-ST521:180:D2B4AACXX:4:1101:1728:1103 2:N:0:CCGTCC: GTCCGGTATTGGGCTAGGAGTTTGTTATTAGTTTTTGGGATTATGTTGGTGAATTTGTTGAGCTTTAACGCTTTC TCAATTGATGGCTTGGGGAGATTTT + BCBFFFDDHHHHFJ@FFHAFGIJJHIGIJGICGIJJIHIGGIIHGFIIJH;CHHIHGFHHIJJIJHHFFEDFFDD EEDCDDDDEDCDDBBB@BB@9ACDC @HWI-ST521:180:D2B4AACXX:4:1101:1720:1143 1:N:0:CCGTCC: TTGGGGTATTTTTAAGGTTGAACTAAAATTCTTTCTCGGACAACCAGCTATCACCAGGCTCGTTAGGCTTTTCAC CTCTACCTACAAGTCTTCTCACTAT + @@@FFF=DFHHHFIJIJIECEHGEAHIG@@?FFHIIGHDGGGGGGIG=GIJGH8@FGGD>CB=BD?CC>ACECCC ACAA@@>CDCCCC@55>ACCD@CDC On 14-01-29 7:05 AM, "Sébastien Boisvert" <sebastien.boisver...@ulaval.ca> wrote: > >On 27 janvier 2014 19:41, Miller, Ruth [ruth.mil...@bccdc.ca] wrote: >> À : denovoassembler-users@lists.sourceforge.net >> Objet : [Denovoassembler-users] Segmentation fault with -k 31 >> >> Hi, >> >> I am getting a segmentation fault when I try to analyse my data with >>k31. >> >> The command is: >> mpiexec -n 80 /global/software/ray/ray230/Ray -k 31 -i >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq o test4 >> >> >> The error is: >> mpiexec noticed that process rank 17 with PID 30162 on node cn085 >>exited on signal 11 (Segmentation fault). >> >> The tail of the log file I get up until then is copied in below (I >>would have copied it all in, but it made the email too large to send to >>the mail list). >> >> I wonder if it might be the same error Matthew Macmanes is seeing in >>his post "_pmiu_daemon(SIGCHLD) segfault using Ray version >>2.3.1-devel<http://sourceforge.net/mailarchive/message.php?msg_id=3172010 >>8>" ? However, it doesn't seem to happen without the k 31 option. >> > >According to your log, your run failed during the loading of data whereas >Matthew's issue was taking place later. > > >Maybe there is some problem with your input file. Can you provide the >first lines. > >> Thanks, >> >> Ruth >> >> >> Rank 41 is loading sequence reads >> Rank 41 : partition is [82553049;84566537], 2013489 sequence reads >> Rank 59 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 40 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 15 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 69 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 39 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 24 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 74 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 14 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 32 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 31 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 79 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 57 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 46 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 13 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 33 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 29 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 72 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 60 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 42 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 12 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 34 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 28 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 73 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 58 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 45 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 9 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 38 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 25 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 76 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 56 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 41 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 11 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 77 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 61 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 10 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 75 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 63 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 62 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 78 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 67 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 71 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 64 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 70 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 68 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 70 has 0 sequence reads (completed) >> Rank 68 has 0 sequence reads (completed) >> Rank 67 has 0 sequence reads (completed) >> Rank 71 has 0 sequence reads (completed) >> Rank 64 has 0 sequence reads (completed) >> Rank 50 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 55 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 53 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 49 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 49 has 0 sequence reads (completed) >> Rank 53 has 0 sequence reads (completed) >> Rank 50 has 0 sequence reads (completed) >> Rank 55 has 0 sequence reads (completed) >> Rank 43 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 44 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 47 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 51 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 54 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 48 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 52 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 51 has 0 sequence reads (completed) >> Rank 54 has 0 sequence reads (completed) >> Rank 48 has 0 sequence reads (completed) >> Rank 52 has 0 sequence reads (completed) >> Rank 43 has 0 sequence reads (completed) >> Rank 44 has 0 sequence reads (completed) >> Rank 47 has 0 sequence reads (completed) >> Rank 16 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 16 has 0 sequence reads (completed) >> Rank 23 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 23 has 0 sequence reads (completed) >> Rank 21 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 21 has 0 sequence reads (completed) >> Rank 22 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 22 has 0 sequence reads (completed) >> Rank 19 is fetching file >>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>loading (please wait...) >> Rank 19 has 0 sequence reads (completed) >> Rank 0 has 0 sequence reads >> Rank 0: assembler memory usage: 192592 KiB >> Rank 0 has 100000 sequence reads >> Rank 0: assembler memory usage: 192592 KiB >> Rank 0 has 200000 sequence reads >> Rank 0: assembler memory usage: 192592 KiB >> Rank 0 has 300000 sequence reads >> Rank 0: assembler memory usage: 208980 KiB >> Rank 0 has 400000 sequence reads >> Rank 0: assembler memory usage: 208980 KiB >> Rank 17 has 0 sequence reads >> Rank 17: assembler memory usage: 163460 KiB >> ------------------------------------------------------------------------------ WatchGuard Dimension instantly turns raw network data into actionable security intelligence. 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Skip the complicated setup - simply import a virtual appliance and go from zero to informed in seconds. http://pubads.g.doubleclick.net/gampad/clk?id=123612991&iu=/4140/ostg.clktrk _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
