On 29 janvier 2014 17:51, Miller, Ruth [ruth.mil...@bccdc.ca] wrote: > À : Sébastien Boisvert; denovoassembler-users@lists.sourceforge.net > Objet : Re: RE : Segmentation fault with -k 31 > > Hi, > I have copied in the top 100 lines of my input file below. > However, I do think the problem is something to do with -k 31, as the > following command: > > "mpiexec -n 80 /global/software/ray/ray230/Ray -i > HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq -o test4" > > just finished successfully on the same file. > > > Thanks, > > Ruth > > > ---- > > @HWI-ST521:180:D2B4AACXX:4:1101:1236:1171 1:N:0:CCGTCC:B > CCTCCTCTCCTGGGTCCCCAGGAGAGGAGGCTACATGCACAGACAGGACCCCTCTCTGCCCTTAAGCCATGCTCT > GGTGGGTGACAGACTCAGAAAG
There should not be a new line here. DNA sequences must be on 1 line in the fastq format I believe. > + > ?@@DDD?AAFDHHD@FHIIIEIHG;;@EDD)?D@B@FBGGIGIGI@D=8BFHHE>C@@@CCAEDC@CDD>@@EEA > CA@C??;=<:@CC?>ACCC:@C > @HWI-ST521:180:D2B4AACXX:4:1101:1236:1171 2:N:0:CCGTCC:B > GCTGGTGTGATGGATGGGAGTGGGACATGTTATAGACTCCTGTTTCTTGTGGTCCTACTGTGTGCTGGTACCCTC > ATCTGGGGACATGTAGTGAGTGG > + > @@CFFADAFDHHHFIIIJ>FEBFHGGG>FFICH@>?BGHI@GBGIJJIHBEDFGGCEGIGDGFCF@:CDCHACHH > E>CBEF9BCC?@@5>A(:@>:>? > @HWI-ST521:180:D2B4AACXX:4:1101:1200:1175 1:N:0:CCGTCC:B > GAATATACTTAACACTACTGAGCTGTGCACTTTAAAAATGGTTCAGATGGTAAATTTTGTGGTGCCTGATTATTA > TTATTTTTTTTAG > + > ?<<DFFDDFFHD<@EDHBGG>G9FB?C?@A4FCBBFEGII9?CGHI<GHI:?BFE<@FH?FHHG4==C@DGFGEH > DAEH4=?>BA?AC > @HWI-ST521:180:D2B4AACXX:4:1101:1200:1175 2:N:0:CCGTCC: > GCTGGGAGCTGTAGTGTAGTTCGCAGACACAGCGTGGATCTGGTGTTGCTGTGGCTGTGGTGTAGGCCAGCAACT > GTAGCTCTGATTTGACCCCTAGCCT > + > B;BDDDDDHFHACGGHGCFHHGF<FGBHGCBF=@FHH?<9?@FBF.6=C@FHEGGA@==ACCD@@B).6;??CBC > CCDC:5::CC@@CCA5,2(<@C393 > @HWI-ST521:180:D2B4AACXX:4:1101:1146:1210 1:N:0:CCGTCC: > GCGTCTGATGCCGACGCTCATCAGACCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATGGAA > GTCGGAATCCGCTAAGGAGTGTGTA > + > B@@FFDFFHHHHHGIGII:FHGIHHCDHHIIGGGIGG=B<FGH;FHEHGIHFEHEHDDFFCDDD3<@B2>::CCC > CCCDDBBD::9@BDDC?CA?<>>?C > @HWI-ST521:180:D2B4AACXX:4:1101:1146:1210 2:N:0:CCGTCC: > GTCCCTCTCGCGCGCTGCTCCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCCAGCGCCATCCATTTTCA > GGGCTAGTTGATTCGGCAGGTGAGT > + > B@=DDEDFHHHHAGGIIJBHHIIJJ8)BGG8AD?CBBDDD-)0>88<?BB7@D<BD8BCDCBDDBD?BCC:>CDC > A@<@BDD::@CCC@?A9@>@1>>8> > @HWI-ST521:180:D2B4AACXX:4:1101:1099:1216 1:N:0:CCGTCC:B > ACTTTCAATAGATCGCAGCGAGGGAGCTGCTCTGCTACGTACGAAACCCCGACCCAGAAGCAGGTCGTCTACGAA > TGGTTTAGCATCAGGTT > + > @@@DDDFFGAFHFDGHBE@@@FBE6:)?DBFFDBBH<8D?=CGGGEBAGEHFFB85?A>?CCCC9:;88ABCB;8 > <>CCCBCA(((+:@CCC > @HWI-ST521:180:D2B4AACXX:4:1101:1099:1216 2:N:0:CCGTCC:B > CGTCCCTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAACCGCGGTCCTATTCCATTATTCCTAGCT > GC > + > 1==D+@AD?DFHD<?ABBFCE>FHACAFE<F@GBD3??;BDHICFGD<CB/@<5AB7BCBB366>@3@CD@@CCA > CD > @HWI-ST521:180:D2B4AACXX:4:1101:1491:1111 1:N:0:CCGTCC: > CCGCACTTGTGACATATGGAAGTTCCCAGGCTAGGGGTTCAATCAGAGCTGCAGCTGCCGGCCTACCTCACAGCC > ACAGAAATTCCAGATCTGAGCCACA > + > ?@@DDFFFHHHFFEHCHHIHEIGHEHGGHIIIGHJIJ@F?9BBGDH@HEFHBFFGGIHCHGHFFBEEECCCACA= > ?CADCDDDD@ADCCDCDDDDD?CCD > @HWI-ST521:180:D2B4AACXX:4:1101:1491:1111 2:N:0:CCGTCC: > GGCTCAGCAGAAACAAATCTGACAAGTATCCATGAGGACAAAGGTTCGATCCCTGGCCTTGCTCAGTGGGTTTAG > GACTCGGCATGGCTGTGAGCTGTGG > + > CCCFFFFFHHHHGJGIIJIJJCGGIJHCEHFGHIIIIEHCDEFGGIBGHGFGHHIICGHIIJIEGH@DCH:ABDB > BDD>CB?=@>9ABCB?C@CDCDCCC > @HWI-ST521:180:D2B4AACXX:4:1101:1446:1133 1:N:0:CCGTCC: > TGTGGGGCGGGCCCGGCCGGGGGTATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGAC > CAGAGCGAAAGCATTTGCCAAGAAT > + > CCBFFFFFHHHHHHHE<ABDDDD67CC8<?CDDD@@0::9BBBACDCDCCCDDCDEDD>>CDB7B;BBBCCDD>@ > @ABBB399>>BCCCDDEACDCDDDC > @HWI-ST521:180:D2B4AACXX:4:1101:1446:1133 2:N:0:CCGTCC: > CATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAA > CATTCTTGGCAAATGCTTTCGCTCT > + > C@CFFFFFGHHHFHIIIJIIGHIIJJIGGJIIJIJHHHIJJIIGJHIHHHEFFDDECBBDBDDDDDCDDEDDCDC > DDDDDEEDDCCDDDDCDDAC?BBBB > @HWI-ST521:180:D2B4AACXX:4:1101:1269:1134 1:N:0:CCGTCC: > AGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGA > AAACATTCTTGGCAAATGCTTTCGC > + > <@B=DDADFHHHHJJFECGCEGGE?EFHGIFHADDG@A=BB=FGCEEHGEHFFBA6>?CCBADBBCDACDDCDDC > CAAABCC:@@>CA>>AC@>CDDCD< > @HWI-ST521:180:D2B4AACXX:4:1101:1269:1134 2:N:0:CCGTCC: > CGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACC > GGCGCAAGACGGACCAGAGCGAAAG > + > ?@<DDDDEDGH;<CGHFHIGGIJIJIF;FH:DFGHGD;@?C(>?CDCDC?=B<8BBBCDBABCDCDA>CCCCC>A > @B@BB9&5?A><59@?BBB(5509@ > @HWI-ST521:180:D2B4AACXX:4:1101:1410:1138 1:N:0:CCGTCC: > CCTAGTGCAATGGTGATGGATAGTGCTTGGATTATGTGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCG > GGGGCATTCGTATTGCGCCGCTAGA > + > @@@DADDDFFFHDCFBHHI@HCDAAFFHBEAFHDFGCDFEFHIGGCBE<GHGICDACGGHIGIEGHIDIHEBBB@ > 8;@BBBCCCDCCCCCC<3<<B<99: > @HWI-ST521:180:D2B4AACXX:4:1101:1410:1138 2:N:0:CCGTCC:B > GTCGGTATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTATTCGAACCTCCGACTTTCGTTCTTGATTAAT > GAAAACATTCTTGGCAAATG > + > ==+AD@DB:CFHHGHIIEH?FEHHIE?DE<FG?@;CGBFGFAF2=CDHGCEHB;?BB9>=ACD?C<@CCCCCCAC > ((4>C3?ACCDD:>CAA<AC > @HWI-ST521:180:D2B4AACXX:4:1101:1296:1143 1:N:0:CCGTCC:B > TCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATG > AAAACATTCTTGGCAAATGCT > + > @@@D:8ADACFDDGIIBGGBGF:E>C8CGFF7B;8=BFEFBFIIICAECFB@D;9=8?@3@B?A?BBB(>>@>A@ > :>:4(24:>:@3:3>@1>AAB > @HWI-ST521:180:D2B4AACXX:4:1101:1296:1143 2:N:0:CCGTCC: > GACCAGAGAGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGA > TACCGTCGTAGTTCCGACCATAAAC > + > :11A?DAD+ABHHB+AAGB94ECFGFEGH:CEH9EHGIG<:99BF>:@@CGGDGHH@FB5;=ABDF<CAA?2;AC >>@@C=@=@)+22(+4<-)9@>@C<> > @HWI-ST521:180:D2B4AACXX:4:1101:1442:1171 1:N:0:CCGTCC: > TGGGAGAGCGGTCGTGGAGAGAGGAGCCCTCCAGGGAAGCTGGAAGTTCTTGGGAGGTGGAGGAGATGGACAGAG > GTTCCGAATCGCCCCAGCTTGGGAG > + > @@@FDFDFHDHFHGDFHEF:D8BGEDDGGHGIFCBF<@CCCHGGCGEEHEEEFF(?A;A@BBB8?9CCCCCCCCC > BCBC:99@BBBC>BBB@?>C???B? > @HWI-ST521:180:D2B4AACXX:4:1101:1442:1171 2:N:0:CCGTCC: > TGCCCTGAGCTGTGCTGTAGGTTGCAGATGCGGCTCAGATCAGGGCAACATCAGATCTTTAACCCACTGAGTGAA > GTGGGTTGGACCTGCATCCTCATGG > + > ;?@FDDEDAFHHFHGIIEHHI?HHGIHJ<AFBE)BBBFG<FHIFI=?FFHHIGAGGCAEEDA77AH?@D@D?@CE > C@AC;B;/25,5(5<?C4>@>@@CC > @HWI-ST521:180:D2B4AACXX:4:1101:1358:1215 1:N:0:CCGTCC: > TGGTTGGAAAGAAATGGGCTACATTTTCTACATAAGAATAACCACCATACGAAAGTTTTTATGAAACTAAAAACC > AAAGGAGGATTTAGCAGTAAATCAA > + > @@@AB=DDDBDDA9FGBF:FE+CCHHF>?EFFF?GFFEFG*0BDF=BB<BFD?@F8BFGIIIIID:@DFFCAEBD > ;?=@@ACBBBABBB>ABABB@B@BA > @HWI-ST521:180:D2B4AACXX:4:1101:1358:1215 2:N:0:CCGTCC: > ATGGCCTTATTCAATCAAGCACTCTATTCTTGATTTACTGCTAAATCCTCCTTTGGTTTTTAGTTTCATAAAAAC > TTTCGTATGGTGGGTATTCTTATGT > + > ?@@DDDDFBDF:C@G@FGB>CFGHJEIIHHIIGHIIICEE@G>DFI??FEFFHIGI8BDHGGGHGIJIJGHGGIJ > B7@EHAE@@D;?AD;@:ACDDCCCC > @HWI-ST521:180:D2B4AACXX:4:1101:1728:1103 1:N:0:CCGTCC: > GGCTTGAAAGTGTTAGCTTCCCTATCCCAAGTACTGGTTTTAAAATCACTTAAAACCTTGTTAGAAAAATCTCCC > CAAGCCATCAATTGAGAAAGCGTTA > + > BCCFFFFFHHHHHIHIJIJHIIIIJHIIIIGHJJIJICGGIJJJ@DFGJHJJJJIIJGIGHIIIFHIJJDHHHHG > A>ABDFDEEEEEDECA?A?@C@?BD > @HWI-ST521:180:D2B4AACXX:4:1101:1728:1103 2:N:0:CCGTCC: > GTCCGGTATTGGGCTAGGAGTTTGTTATTAGTTTTTGGGATTATGTTGGTGAATTTGTTGAGCTTTAACGCTTTC > TCAATTGATGGCTTGGGGAGATTTT > + > BCBFFFDDHHHHFJ@FFHAFGIJJHIGIJGICGIJJIHIGGIIHGFIIJH;CHHIHGFHHIJJIJHHFFEDFFDD > EEDCDDDDEDCDDBBB@BB@9ACDC > @HWI-ST521:180:D2B4AACXX:4:1101:1720:1143 1:N:0:CCGTCC: > TTGGGGTATTTTTAAGGTTGAACTAAAATTCTTTCTCGGACAACCAGCTATCACCAGGCTCGTTAGGCTTTTCAC > CTCTACCTACAAGTCTTCTCACTAT > + > @@@FFF=DFHHHFIJIJIECEHGEAHIG@@?FFHIIGHDGGGGGGIG=GIJGH8@FGGD>CB=BD?CC>ACECCC > ACAA@@>CDCCCC@55>ACCD@CDC > > > > > On 14-01-29 7:05 AM, "Sébastien Boisvert" <sebastien.boisver...@ulaval.ca> > wrote: > >> >>On 27 janvier 2014 19:41, Miller, Ruth [ruth.mil...@bccdc.ca] wrote: >>> À : denovoassembler-users@lists.sourceforge.net >>> Objet : [Denovoassembler-users] Segmentation fault with -k 31 >>> >>> Hi, >>> >>> I am getting a segmentation fault when I try to analyse my data with >>>k31. >>> >>> The command is: >>> mpiexec -n 80 /global/software/ray/ray230/Ray -k 31 -i >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq o test4 >>> >>> >>> The error is: >>> mpiexec noticed that process rank 17 with PID 30162 on node cn085 >>>exited on signal 11 (Segmentation fault). >>> >>> The tail of the log file I get up until then is copied in below (I >>>would have copied it all in, but it made the email too large to send to >>>the mail list). >>> >>> I wonder if it might be the same error Matthew Macmanes is seeing in >>>his post "_pmiu_daemon(SIGCHLD) segfault using Ray version >>>2.3.1-devel<http://sourceforge.net/mailarchive/message.php?msg_id=3172010 >>>8>" ? However, it doesn't seem to happen without the k 31 option. >>> >> >>According to your log, your run failed during the loading of data whereas >>Matthew's issue was taking place later. >> >> >>Maybe there is some problem with your input file. Can you provide the >>first lines. >> >>> Thanks, >>> >>> Ruth >>> >>> >>> Rank 41 is loading sequence reads >>> Rank 41 : partition is [82553049;84566537], 2013489 sequence reads >>> Rank 59 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 40 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 15 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 69 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 39 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 24 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 74 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 14 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 32 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 31 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 79 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 57 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 46 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 13 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 33 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 29 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 72 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 60 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 42 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 12 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 34 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 28 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 73 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 58 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 45 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 9 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 38 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 25 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 76 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 56 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 41 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 11 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 77 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 61 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 10 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 75 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 63 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 62 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 78 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 67 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 71 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 64 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 70 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 68 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 70 has 0 sequence reads (completed) >>> Rank 68 has 0 sequence reads (completed) >>> Rank 67 has 0 sequence reads (completed) >>> Rank 71 has 0 sequence reads (completed) >>> Rank 64 has 0 sequence reads (completed) >>> Rank 50 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 55 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 53 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 49 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 49 has 0 sequence reads (completed) >>> Rank 53 has 0 sequence reads (completed) >>> Rank 50 has 0 sequence reads (completed) >>> Rank 55 has 0 sequence reads (completed) >>> Rank 43 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 44 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 47 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 51 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 54 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 48 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 52 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 51 has 0 sequence reads (completed) >>> Rank 54 has 0 sequence reads (completed) >>> Rank 48 has 0 sequence reads (completed) >>> Rank 52 has 0 sequence reads (completed) >>> Rank 43 has 0 sequence reads (completed) >>> Rank 44 has 0 sequence reads (completed) >>> Rank 47 has 0 sequence reads (completed) >>> Rank 16 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 16 has 0 sequence reads (completed) >>> Rank 23 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 23 has 0 sequence reads (completed) >>> Rank 21 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 21 has 0 sequence reads (completed) >>> Rank 22 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 22 has 0 sequence reads (completed) >>> Rank 19 is fetching file >>>HI.0946.004.Index_16.St-4_Rboth.fastq.pass_CPNHB_50.fastq with lazy >>>loading (please wait...) >>> Rank 19 has 0 sequence reads (completed) >>> Rank 0 has 0 sequence reads >>> Rank 0: assembler memory usage: 192592 KiB >>> Rank 0 has 100000 sequence reads >>> Rank 0: assembler memory usage: 192592 KiB >>> Rank 0 has 200000 sequence reads >>> Rank 0: assembler memory usage: 192592 KiB >>> Rank 0 has 300000 sequence reads >>> Rank 0: assembler memory usage: 208980 KiB >>> Rank 0 has 400000 sequence reads >>> Rank 0: assembler memory usage: 208980 KiB >>> Rank 17 has 0 sequence reads >>> Rank 17: assembler memory usage: 163460 KiB >>> > ------------------------------------------------------------------------------ WatchGuard Dimension instantly turns raw network data into actionable security intelligence. It gives you real-time visual feedback on key security issues and trends. Skip the complicated setup - simply import a virtual appliance and go from zero to informed in seconds. http://pubads.g.doubleclick.net/gampad/clk?id=123612991&iu=/4140/ostg.clktrk _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
