On , Adriana Fróes [dricamfr...@gmail.com] wrote: > À : Sébastien Boisvert > Objet : Assembler panic > > Dear Sébastien, > > I'm using Ray to assemble lots of metagenomes but some of them doesn't work > and show the following message: > > Rank 0: Assembler panic: no k-mers found in reads. > Rank 0: Perhaps reads are shorter than the k-mer length (change -k) > > I used the default options, so k is 21. I tried to change the -k parameter to > 19 > > Do you now what is happening and how to solve it?
For one of those samples that do not work out for you, can you provide the first sequences in the input files ? > > Thank you very much > > Yours sincerely > > -- > Adriana M. Froes > > ------------------------------------------------------------------------------ Put Bad Developers to Shame Dominate Development with Jenkins Continuous Integration Continuously Automate Build, Test & Deployment Start a new project now. Try Jenkins in the cloud. http://p.sf.net/sfu/13600_Cloudbees _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
