The problem is probably a bug in the code related to long reads.
________________________________ > From: dricamfr...@gmail.com > To: sebastien.boisver...@ulaval.ca > Date: Tue, 15 Apr 2014 21:34:13 -0400 > Subject: Re: RE : Assembler panic > > Hi Sebastien, > > I am sending some sequences of the file for you. Are from Sanger > sequencing metagenome. > Thanks! > > > > On Fri, Apr 11, 2014 at 1:07 PM, Sébastien Boisvert > <sebastien.boisver...@ulaval.ca<mailto:sebastien.boisver...@ulaval.ca>> > wrote: > > On , Adriana Fróes > [dricamfr...@gmail.com<mailto:dricamfr...@gmail.com>] wrote: > > À : Sébastien Boisvert > > Objet : Assembler panic > > > > Dear Sébastien, > > > > I'm using Ray to assemble lots of metagenomes but some of them > doesn't work and show the following message: > > > > Rank 0: Assembler panic: no k-mers found in reads. > > Rank 0: Perhaps reads are shorter than the k-mer length (change -k) > > > > I used the default options, so k is 21. I tried to change the -k > parameter to 19 > > > > Do you now what is happening and how to solve it? > > For one of those samples that do not work out for you, can you provide > the first sequences in > the input files ? > > > > > > Thank you very much > > > > Yours sincerely > > > > -- > > Adriana M. Froes > > > > > > > > -- > Adriana M. Froes > > ------------------------------------------------------------------------------ Is your legacy SCM system holding you back? Join Perforce May 7 to find out: • 3 signs your SCM is hindering your productivity • Requirements for releasing software faster • Expert tips and advice for migrating your SCM now http://p.sf.net/sfu/perforce _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
