> ________________________________________ > From: Deborah Triant [dtri...@virginia.edu] > Sent: Tuesday, September 30, 2014 7:36 PM > To: denovoassembler-users@lists.sourceforge.net > Subject: [Denovoassembler-users] using checkpoints > Hi, > I am using the Ray assembler and hit the walltime on my cluster. I want to > continue the assembly using the '-read-write-checkpoints' option but from > what I've been reading here on the mailing list, it seems that I cannot do > this unless I include it as an option in my original run. > Here is the format from my first run: > ibrun Ray -p file1.fastq.gz -p file2.fastq.gz -show-memory-usage -o > Ray.out 2>>Ray.error >>Ray.log
The -p option takes 2 or 4 arguments, not 1. > > For the second: > ibrun Ray -p file1.fastq.gz -p file2.fastq.gz -show-memory-usage > -read-write-checkpoints Ray_092614.checkpoints -o Ray2.out 2>>Ray.error > >>Ray.log > > Would I have needed to include the -read-write-checkpoints in my first run > for this to work or will Ray begin the run where it left off with the option > included in the second run. I also changed the name of my output directory > for the second run. You need to use the same command, but you do have to change the output directory. > Thanks! > Deb > > ------------------------------------------------------------------------------ > Meet PCI DSS 3.0 Compliance Requirements with EventLog Analyzer > Achieve PCI DSS 3.0 Compliant Status with Out-of-the-box PCI DSS Reports > Are you Audit-Ready for PCI DSS 3.0 Compliance? Download White paper > Comply to PCI DSS 3.0 Requirement 10 and 11.5 with EventLog Analyzer > http://pubads.g.doubleclick.net/gampad/clk?id=154622311&iu=/4140/ostg.clktrk > _______________________________________________ > Denovoassembler-users mailing list > Denovoassembler-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/denovoassembler-users ------------------------------------------------------------------------------ Meet PCI DSS 3.0 Compliance Requirements with EventLog Analyzer Achieve PCI DSS 3.0 Compliant Status with Out-of-the-box PCI DSS Reports Are you Audit-Ready for PCI DSS 3.0 Compliance? Download White paper Comply to PCI DSS 3.0 Requirement 10 and 11.5 with EventLog Analyzer http://pubads.g.doubleclick.net/gampad/clk?id=154622311&iu=/4140/ostg.clktrk _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
