> ________________________________________ > De : Esmail Foroozan [eforoo...@nigeb.ac.ir] > Date d'envoi : 6 février 2015 11:40 > À : Sébastien Boisvert > Objet : Ray scafolding problem > hello dear sebastien, > I assemble a genome with Ray but there is something odd, it seems Ray do not > scaffold at all! Would you please help me with the problem? > Here is my command line and the outnumber file is attached to this mail. > > mpiexec -n 2 Ray -k 21 -p Serratia_marcescens_450_10_251.fq > Serratia_marcescens_450_10_252.fq -o 21
The -p argument requires a pair of files. That is likely the problem here. > mpiexec -n 2 Ray -k 21 -debug-scaffolder -p > Serratia_marcescens_450_10_251.fq Serratia_marcescens_450_10_252.fq -o > 21debug Same here. > > Thanks in advance and best regards > esmail foroozan > NIGEB ------------------------------------------------------------------------------ Dive into the World of Parallel Programming The Go Parallel Website, sponsored by Intel and developed in partnership with Slashdot Media, is your hub for all things parallel software development, from weekly thought leadership blogs to news, videos, case studies, tutorials and more. Take a look and join the conversation now. http://goparallel.sourceforge.net/ _______________________________________________ Denovoassembler-users mailing list Denovoassembler-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/denovoassembler-users
