To understand the differences, go read the paragram "From Ray to Ray Meta"
http://genomebiology.biomedcentral.com/articles/10.1186/gb-2012-13-12-r122#Sec11
________________________________
From: Vishal N Koparde <vnkopa...@vcu.edu>
Sent: June 22, 2016 5:28 AM
To: Sébastien Boisvert
Subject: Re: Question about Ray Meta?
So it auto detects if the input reads are coming from one genome versus a
metagenome??
Vishal Koparde, PhD
Bioinformatics Scientist
Virginia Commonwealth University
Richmond VA USA
On Wed, Jun 22, 2016 at 7:27 AM -0400, "Sébastien Boisvert"
<s...@boisvert.info<mailto:s...@boisvert.info>> wrote:
There are no difference. There is a section in the Genome Biology 2012
explaning the changes made to the software.
________________________________
From: Vishal N Koparde <vnkopa...@vcu.edu>
Sent: June 22, 2016 5:21 AM
To: Sébastien Boisvert
Subject: Re: Question about Ray Meta?
I understand that part. Could you please point out the difference in commands
if I am assembly a single genome versus a metagenomic assembly??
Vishal Koparde, PhD
Bioinformatics Scientist
Virginia Commonwealth University
Richmond VA USA
On Wed, Jun 22, 2016 at 7:19 AM -0400, "Sébastien Boisvert"
<s...@boisvert.info<mailto:s...@boisvert.info>> wrote:
Ray Meta is the collective name for the set of option to perform profiling in
Ray.
________________________________
From: Vishal N Koparde <vnkopa...@vcu.edu>
Sent: June 14, 2016 8:13 PM
To: Sébastien Boisvert
Subject: Re: Question about Ray Meta?
I have submitted the question on github too. But, since i didn't get any
response, I thought I would email you directly.
Vishal Koparde, PhD
Bioinformatics Scientist
Virginia Commonwealth University
Richmond VA USA
On Tue, Jun 14, 2016 at 10:12 PM -0400, "Sébastien Boisvert"
<s...@boisvert.info<mailto:s...@boisvert.info>> wrote:
Please send your questions to the mailing list. I will answer to the mailing
list.
________________________________
From: Vishal N Koparde <vnkopa...@vcu.edu>
Sent: June 3, 2016 8:26 AM
To: s...@boisvert.info
Subject: Question about Ray Meta?
Hello Seb,
I have successfully compiled and run Ray, but have no clue how to run Ray Meta?
What is the difference in the command line to run Ray Meta vs. Ray vanilla? I
have a metagenomic sample with 3 closely related species as a test case.
Thanks,
-Vishal
Vishal N Koparde, Ph. D.
NGS Bioinformatics Scientist,
Nucleic Acid Research Facilities/
Center for Study of Biological Complexity,
1101 East Marshall Street, #5-050,
P.O. Box 980678
Virginia Commonwealth University
Richmond VA 23298-0678
Email: vnkopa...@vcu.edu<mailto:vnkopa...@vcu.edu>
Phone: +1-804-628-3060
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