Just FYI, in WebIDE, there are buttons to root the phone when it's possible.
In Runtime > Runtime Info.
We use run ADB for the user, and run scripts to root ADB server side.

Asa Dotzler wrote:
> On 8/6/14, 9:15 AM, Josh Aas wrote:
> >I got a Flame phone and wanted to update it to 2.0 nightly so I could
> >test/dogfood. Last week I couldn't figure out how to do that via the
> >Flame home page, but someone has since added instructions. Thanks to
> >whoever did that!
> >
> >https://developer.mozilla.org/en-US/Firefox_OS/Developer_phone_guide/Flame
> >
> >One issue with the instructions, though, at least on OS X - they only
> >really work if both flash steps are run as root (sudo). Flashing the
> >base doesn't require root, but the flash to 2.0 nightly requires the adb
> >daemon to be running as root, and if you didn't flash the base as root
> >adb will not be running as root. You'll need to do "adb kill-server",
> >which most people won't know how to do. If you didn't run the base flash
> >as root, and you figured out how to kill the adb server, you then need
> >to run the second flash as root to get adb to start as root. We should
> >either recommend that people run the flash commands as root (prefix
> >"sudo"), or explain how to get adb running as root first.
> >
> >Other than this, the page's information is much better than before.
> >Still could be better organized, though.
> 
> Chris Mills manages this page, with input from me and other Flame
> team folks.
> 
> I'm glad it's an improvement. I've copied Chris on this in the hopes
> that he can find a way to incorporate the Mac OS X note into the
> instructions -- assuming that's as expected and not a bug for us to
> fix.
> 
> Thanks for the great feedback, Josh.
> 
> - A
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-- Paul
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