Awesome! Britt and I used ctakes to combine public and private data in this paper
"*Improved **de-identification** of physician notes through integrative modeling of both public and private medical text*" http://www.biomedcentral.com/1472-6947/13/112 On Sep 24, 2015 11:02 AM, "Mattmann, Chris A (3980)" < [email protected]> wrote: > Hey Andy, > > Sure, the clinical use case is to combine public and private data. > So take a company’s private clinical data, and research, and then > map it e.g.,to public research publications and connect the two. > > So the tool I’m talking about is Shangridocs: > > http://github.com/chrismattmann/shangridocs/ > > Would love to chat if people are interested in doing some funding > proposal related to this. I see a big need for it across multiple > domains. > > Cheers, > Chris > > ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ > Chris Mattmann, Ph.D. > Chief Architect > Instrument Software and Science Data Systems Section (398) > NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA > Office: 168-519, Mailstop: 168-527 > Email: [email protected] > WWW: http://sunset.usc.edu/~mattmann/ > ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ > Adjunct Associate Professor, Computer Science Department > University of Southern California, Los Angeles, CA 90089 USA > ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ > > > > > > -----Original Message----- > From: andy mcmurry <[email protected]> > Reply-To: "[email protected]" <[email protected]> > Date: Saturday, September 19, 2015 at 8:44 PM > To: "[email protected]" <[email protected]> > Cc: "[email protected]" <[email protected]> > Subject: Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits > Hackathon Proposals > > >Chris: sounds interesting. could you share some of your clinical use > >cases ? > > > >On Sep 19, 2015 9:27 AM, "Mattmann, Chris A (3980)" < > >[email protected]> wrote: > >> > >> Hey Folks, > >> > >> If anyone wants to discuss how JPL can contribute to a BD2K > >> proposal or if someone is already leading it, I would definitely > >> be interested in contributing. We have been combining Tika, cTAKES, > >> and other software (Spark, OODT) into a solution we call “Shangridocs” > >> which could be quite compelling here. > >> > >> Please feel free to contact me off-line and would love to discuss. > >> > >> Cheers, > >> Chris > >> > >> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ > >> Chris Mattmann, Ph.D. > >> Chief Architect > >> Instrument Software and Science Data Systems Section (398) > >> NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA > >> Office: 168-519, Mailstop: 168-527 > >> Email: [email protected] > >> WWW: http://sunset.usc.edu/~mattmann/ > >> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ > >> Adjunct Associate Professor, Computer Science Department > >> University of Southern California, Los Angeles, CA 90089 USA > >> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ > >> > >> > >> > >> > >> > >> -----Original Message----- > >> From: andy mcmurry <[email protected]> > >> Reply-To: "[email protected]" <[email protected]> > >> Date: Friday, September 18, 2015 at 4:24 PM > >> To: "[email protected]" <[email protected]> > >> Cc: "[email protected]" <[email protected]> > >> Subject: Re: [cancer-informatics] Fwd: BD2K Coordination Center Solicits > >> Hackathon Proposals > >> > >> >+1 , I support the idea of cTAKES as an intermediate step for other > >> >annotation sources, data "mash up". > >> >Phenotypes -- Genes, etc. > >> > > >> > > >> >On Thu, Sep 17, 2015 at 2:52 PM, Wilson, Brian > >> ><[email protected]> wrote: > >> > > >> > > >> >> > Food for thought :) > >> > > >> >> > > >> >> > The Big Data to Knowledge Coordination Center (BD2KCC) is > >>announcing > >> >> > a call for hackathon event proposals related to biomedical big > >>data > >> >> > science. The BD2KCC is part of the National Institutes of Health > >> >> > (NIH)’s Big Data to Knowledge (BD2K) program, which is committed to > >> >> > fostering consortium activities and collaborations among the > >> >> > nationwide BD2K investigator teams. The current request for > >> >> > applications aims to advance the mission of BD2K by inviting > >> >> > proposals to host public hackathon events that will harness broad > >> >> > expertise for the development and application of biomedical big > >>data > >> >> > software tools. Applications for the first round of funding are due > >> >> > October 15th, 2015. More information about this opportunity can be > >> >> > found at: > >> >http://bd2kcc.org/files/hackathons.pdf > >> ><http://bd2kcc.org/files/hackathons.pdf>. > >> >> > >> >> > >> >> > >> > > >> >The information in this e-mail is intended only for the person to whom > >>it > >> >is addressed. If you believe this e-mail was sent to you in error and > >>the > >> >e-mail contains patient information, please contact the Tufts Medical > >> >Center HIPAA Hotline at > >> >(617) 636-4422 <tel:%28617%29%20636-4422>. If the e-mail was sent to > >>you > >> >in error but does not contain patient information, please contact the > >> >sender and properly dispose of the e-mail. > >> > > >> > > >> > > >> > > >> > > >> > >
