Hi, great :-)
The ANNIE Tokenizer and Sentence Splitter will maybe best be replaced by the coresponding cTAKES components. The ruta word-level features can then additionally come in handy for token classes. Best, Peter Am 09.10.2015 um 15:42 schrieb Azad Dehghan: > Peter, > > I do have full IP for the files that matter: rule-set, dictionaries, and > the TwoPass implementation. ANNIE Tokeniser and Sentence splitter won't be > 'ported' (?) as RUTA provides the required word-level features used by the > rule-set. > > Azad > > On 9 October 2015 at 14:32, Peter Klügl <peter.klu...@averbis.com> wrote: > >> Hi, >> >> do you have full IP for all files in the sourceforge project? ... e.g., >> the files in GATE/plugins/ANNIE/ or GATE/plugins/ANNIE/resources/gazetteer/ >> >> Best, >> >> Peter >> >> Am 08.10.2015 um 21:44 schrieb Azad Dehghan: >>> Hi Pei, >>> >>> The licence has now been updated. >>> >>> @Andy the licencing is up to the IP holder. >>> >>> Cheers, >>> Azad >>> >>> On 8 October 2015 at 20:03, Chen, Pei <pei.c...@childrens.harvard.edu> >>> wrote: >>> >>>> This is great news! >>>>> What is the current status and procedure? Is there an explicit >>>> contribution to cTAKES? Is there an ICLA? What about the license of the >>>> sourceforge project? >>>> Jira has been opened to track this: >>>> https://issues.apache.org/jira/browse/CTAKES-384 >>>> >>>> 1) Azad, would you be willing to switch licenses? I believe it's >>>> currently GNU3 -> ASL 2.0? >>>> 2) Create a project/module in cTAKES sandbox for this >>>> 3) Export/Import sourceforge and attach the code to the Jira initially. >>>> One of the current cTAKES committers can commit it to the repo (Until >> folks >>>> can commit directly to the ctakes repo directly going forward.) >>>> >>>> -----Original Message----- >>>> From: Peter Klügl [mailto:peter.klu...@averbis.com] >>>> Sent: Thursday, October 08, 2015 8:06 AM >>>> To: dev@ctakes.apache.org >>>> Subject: Re: Combining Knowledge- and Data-driven Methods for >>>> De-identification of Clinical Narratives >>>> >>>> Hi, >>>> >>>> I can offer my help here if required. >>>> >>>> I have experience in translating JAPE rules to UIMA Ruta and already >>>> worked with clinical notes, e.g., also concerning deidentification. >>>> >>>> The problem is that I can only invest a few hours in the next two weeks. >>>> I will have more time next month or even more next year. >>>> >>>> What is the current status and procedure? Is there an explicit >>>> contribution to cTAKES? Is there an ICLA? What about the license of the >>>> sourceforge project? >>>> >>>> Best, >>>> >>>> Peter >>>> >>>> Am 01.10.2015 um 16:20 schrieb Pei Chen: >>>>> Hi Azad, >>>>> This is awesome news. Thanks for adding in the code that was >>>>> referenced by the paper. I'll create a Jira to track we need to port >>>>> it over to UIMA/Ruta. >>>>> >>>>> In the meantime, the link is at: >>>>> https://urldefense.proofpoint.com/v2/url?u=http-3A__sourceforge.net_p_ >>>>> >> clinical-2Ddeid_code_ci_master_tree_&d=BQICaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=huK2MFkj300qccT8OSuuoYhy_xEYujfPwiAxhPVz5WY&m=yjhqco4EH0XrR798kbkzfYcFQ8z8MR9UF8mMRSjKTH0&s=_k7AbwzkVrRwTrNC3LArZ5hQ5Q47eh06KCDla7UBugY&e= >>>> for those who may be interested in helping out... >>>>> --Pei >>>>> >>>>> Hello Pei, >>>>> >>>>> I hope all is well. >>>>> >>>>> I have now uploaded the source code for cDeid >>>>> (https://urldefense.proofpoint.com/v2/url?u=http-3A__sourceforge.net_p >>>>> _clinical-2Ddeid_code_ci_master_tree_&d=BQICaQ&c=qS4goWBT7poplM69zy_3x >>>>> hKwEW14JZMSdioCoppxeFU&r=huK2MFkj300qccT8OSuuoYhy_xEYujfPwiAxhPVz5WY&m >>>>> >> =yjhqco4EH0XrR798kbkzfYcFQ8z8MR9UF8mMRSjKTH0&s=_k7AbwzkVrRwTrNC3LArZ5hQ5Q47eh06KCDla7UBugY&e= >>>> ) ; I have tried to make the code as portable and modular as possible >> with >>>> some trade-off for performance. This should help with porting the code >> to >>>> cTAKES/UIMA. >>>>> Once you let the community know I will try to get involved to help >>>>> with translating JAPE to RUTA, etc. >>>>> >>>>> Best, >>>>> Azad >>
