Hi Peter/Azad, Per INFRA-10579, since there is only a limited history, they suggested we do the export/import ourselves. The initial code base has been imported into: sandbox/ctakes-clinical-deid
Feel free to do an svn co https://svn.apache.org/repos/asf/ctakes/sandbox/ctakes-clinical-deid/ and attach any patches to CTAKES-384 until you have commit access... --Pei On Mon, Nov 2, 2015 at 3:56 AM, Peter Klügl <peter.klu...@averbis.com> wrote: > Hi, > > I just wanted to ask about the current status. I assume that the source > is not yet in svn, right? Let me know when I can do something (in case I > miss some mail on this list). > > Best, > > Peter > > Am 13.10.2015 um 21:17 schrieb Pei Chen: >> Thanks Azad. >> I submitted a Jira to infra to help us do the import (that way we will try >> and preserve the commit history). >> In the meantime, would you mind filling out the ICLA[1]. >> >> [Reminder: Let's keep it in sandbox and not release it until all of the 3rd >> party dependencies licenses have been verified.] >> >> [1] http://www.apache.org/licenses/#clas >> >> Thanks, >> Pei >> >> Pei Chen >> Wired Informatics <http://www.wiredinformatics.com> >> 265 Franklin St Ste 1702 >> Boston, MA 02110 >> tel: (617) 433-7544 >> pei.c...@wiredinformatics.com >> >> On Sun, Oct 11, 2015 at 3:51 PM, Azad Dehghan <azad.dehg...@gmail.com> >> wrote: >> >>> 1: Yes. Sorted. >>> 3: Code attached to the Jira. >>> >>> Azad >>> >>> On 8 October 2015 at 20:03, Chen, Pei <pei.c...@childrens.harvard.edu> >>> wrote: >>> >>>> This is great news! >>>>> What is the current status and procedure? Is there an explicit >>>> contribution to cTAKES? Is there an ICLA? What about the license of the >>>> sourceforge project? >>>> Jira has been opened to track this: >>>> https://issues.apache.org/jira/browse/CTAKES-384 >>>> >>>> 1) Azad, would you be willing to switch licenses? I believe it's >>>> currently GNU3 -> ASL 2.0? >>>> 2) Create a project/module in cTAKES sandbox for this >>>> 3) Export/Import sourceforge and attach the code to the Jira initially. >>>> One of the current cTAKES committers can commit it to the repo (Until >>> folks >>>> can commit directly to the ctakes repo directly going forward.) >>>> >>>> -----Original Message----- >>>> From: Peter Klügl [mailto:peter.klu...@averbis.com] >>>> Sent: Thursday, October 08, 2015 8:06 AM >>>> To: dev@ctakes.apache.org >>>> Subject: Re: Combining Knowledge- and Data-driven Methods for >>>> De-identification of Clinical Narratives >>>> >>>> Hi, >>>> >>>> I can offer my help here if required. >>>> >>>> I have experience in translating JAPE rules to UIMA Ruta and already >>>> worked with clinical notes, e.g., also concerning deidentification. >>>> >>>> The problem is that I can only invest a few hours in the next two weeks. >>>> I will have more time next month or even more next year. >>>> >>>> What is the current status and procedure? Is there an explicit >>>> contribution to cTAKES? Is there an ICLA? What about the license of the >>>> sourceforge project? >>>> >>>> Best, >>>> >>>> Peter >>>> >>>> Am 01.10.2015 um 16:20 schrieb Pei Chen: >>>>> Hi Azad, >>>>> This is awesome news. Thanks for adding in the code that was >>>>> referenced by the paper. I'll create a Jira to track we need to port >>>>> it over to UIMA/Ruta. >>>>> >>>>> In the meantime, the link is at: >>>>> https://urldefense.proofpoint.com/v2/url?u=http-3A__sourceforge.net_p_ >>>>> >>> clinical-2Ddeid_code_ci_master_tree_&d=BQICaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=huK2MFkj300qccT8OSuuoYhy_xEYujfPwiAxhPVz5WY&m=yjhqco4EH0XrR798kbkzfYcFQ8z8MR9UF8mMRSjKTH0&s=_k7AbwzkVrRwTrNC3LArZ5hQ5Q47eh06KCDla7UBugY&e= >>>> for those who may be interested in helping out... >>>>> --Pei >>>>> >>>>> Hello Pei, >>>>> >>>>> I hope all is well. >>>>> >>>>> I have now uploaded the source code for cDeid >>>>> (https://urldefense.proofpoint.com/v2/url?u=http-3A__sourceforge.net_p >>>>> _clinical-2Ddeid_code_ci_master_tree_&d=BQICaQ&c=qS4goWBT7poplM69zy_3x >>>>> hKwEW14JZMSdioCoppxeFU&r=huK2MFkj300qccT8OSuuoYhy_xEYujfPwiAxhPVz5WY&m >>>>> >>> =yjhqco4EH0XrR798kbkzfYcFQ8z8MR9UF8mMRSjKTH0&s=_k7AbwzkVrRwTrNC3LArZ5hQ5Q47eh06KCDla7UBugY&e= >>>> ) ; I have tried to make the code as portable and modular as possible >>> with >>>> some trade-off for performance. This should help with porting the code to >>>> cTAKES/UIMA. >>>>> Once you let the community know I will try to get involved to help >>>>> with translating JAPE to RUTA, etc. >>>>> >>>>> Best, >>>>> Azad >>>> >
