Hi, I just wanted to mention that I haven't forgot about it. Unfortunately, there is just no spare time right now. I hope I will be able to provide the patches in December.
Best, Peter Am 06.11.2015 um 16:40 schrieb Pei Chen: > Hi Peter, > I think the ctakes-examples is probably a good starting point at least > in terms of maven modules, etc. I think it would be good if we use > uimaFIT style as primary approach to wiring components together and > generate desc's as secondary... > I think the actual components that would be required is probably best > left up to what is actually required for best performing c-deid. The > output would be interesting, I'm not sure if we should treat this as > an independent preprocessing component or part of a pipeline (in which > case, we may need to propose a change to the type system or perhaps an > alternative JCas view. You can probably open up that discussion to > the dev group as you see fit.) > > My 2 cents... > > > On Fri, Nov 6, 2015 at 3:38 AM, Peter Klügl <peter.klu...@averbis.com> wrote: >> Hi, >> >> Is there a cTAKES project that may serve as an example on how the cTAKES >> community develops or how a project should look like? >> I learned that different people set up UIMA project in a quite different >> manner and I do not what to get inspired by "some sort of out-dated" >> approach in the cTAKES repo. >> >> Are there restriction or preferences about the preprocessing components >> that should be used and the kind of "output" of the project. >> Components: On which components may the componetns rely: tokenizer, ... >> parser, ... dict lookup? >> "output": Should the project provide a pipeline or a single AE? >> >> More comments below. >> >> Am 03.11.2015 um 16:54 schrieb Azad Dehghan: >>>> >>>> Who else plans to provide patches for it? Just to avoid duplicate work >>>> and to coordnate the efforts ... >>>> >>> I would like to help with the translating JAPE to RUTA. >> You can already go ahead with the UIMA Ruta Workbench if you want, or >> wait until I set up the project with ruta integration. >> >> If any questions arise, just ask :-) >> >>>> Is there a development dataset which was utilized for the initial >>>> development, and if yes, is it possible to contribute it too? >>>> >>> The data set is unfortunately not publicly available; i2b2 >>> <https://www.i2b2.org/NLP/DataSets/Main.php> typically releases the data >>> sets 12 months after a given challenge; this is done on an individual basis >>> and involve a Data Use Agreement. >>> >>> However, I will be able to conduct and coordinate the validation. >>> >> Ok, I'll investigate if we have already access to the dataset here. >> >> >>>> My first step would be: >>>> - set up a maven project >>>> - set up a development pipeline in a test (with cTAKES components >>>> replacing the previous ANNIE preprocessing) >>>> >>>> >>>> But one item that we need to review is the 3rd party libs jars that >>>> were included to ensure compatibility. I’ll be sure to take a look at >>>> that over the next few weeks. >>>> >>>> —Pei >>>> >>>> >>> @Pei - once ANNIE components are replaced there is should not be a need to >>> worry about the 3rd party libs. >>> >>> Also, just a thought: we may want to create an independent component for >>> the Two Pass recognition (TwoPass.java) as this method have shown useful >>> for general NER on longitudinal data and surely useful independent of the >>> deid component. >>> >>> >>> Cheers, >>> Azad >>>
