Oh beautiful! Thank you Chris. Exactly the direction I was going to. I'll dive into it ...
Thanks, ben -----Original Message----- From: Mattmann, Chris A (3980) [mailto:[email protected]] Sent: Friday, February 26, 2016 1:54 PM To: [email protected] Subject: Re: ctakes our existing web application Hey there, You may want to look at Shangridocs, which provides cTAKES as a REST service via Tika: http://github.com/chrismattmann/shangridocs.git Happy to help get you started. Cheers, Chris ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Chris Mattmann, Ph.D. Chief Architect Instrument Software and Science Data Systems Section (398) NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA Office: 168-519, Mailstop: 168-527 Email: [email protected] WWW: http://sunset.usc.edu/~mattmann/ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Adjunct Associate Professor, Computer Science Department University of Southern California, Los Angeles, CA 90089 USA ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ -----Original Message----- From: Ben Yu <[email protected]> Reply-To: "[email protected]" <[email protected]> Date: Friday, February 26, 2016 at 12:52 PM To: "[email protected]" <[email protected]> Subject: ctakes our existing web application >Hi group, >We started to look at options to integrate ctakes into our existing web >app and started the experiment on the ClinicalPipelineFactory class. I >can run it with different engine descriptions and see the outputs >without doing any modifications. But when I create my own class in my >web app and follow the same logic, I got this error: >Exception in thread "main" java.lang.IllegalArgumentException: URI is >not hierarchical > at java.io.File.<init>(File.java:418) > at >org.apache.ctakes.lvg.ae.LvgAnnotator.createAnnotatorDescription(LvgAnn >ota >tor.java:565) > at >edu.utah.porc.chartreview.ctakes.ClinicalPipelineFactory.getTokenProces >sin >gPipeline(ClinicalPipelineFactory.java:132) > at >edu.utah.porc.chartreview.ctakes.ClinicalPipelineFactory.getDefaultPipe >lin >e(ClinicalPipelineFactory.java:71) > at >edu.utah.porc.chartreview.ctakes.ClinicalPipelineFactory.main(ClinicalP >ipe >lineFactory.java:244) > >I am very new to ctakes and I realized there are lots of setups need to >be done but not sure if this is related to anything amiss? > >The web app is a spring/maven project. I've put in all the ctakes >dependencies and got over the compiling. Above was a run time error. > >Thanks in adance for any help, >Ben >801-587-7751 >
