Hi group,
We started to look at options to integrate ctakes into our existing web app and
started the experiment on the ClinicalPipelineFactory class. I can run it with
different engine descriptions and see the outputs without doing any
modifications. But when I create my own class in my web app and follow the same
logic, I got this error:
Exception in thread "main" java.lang.IllegalArgumentException: URI is not
hierarchical
at java.io.File.<init>(File.java:418)
at
org.apache.ctakes.lvg.ae.LvgAnnotator.createAnnotatorDescription(LvgAnnotator.java:565)
at
edu.utah.porc.chartreview.ctakes.ClinicalPipelineFactory.getTokenProcessingPipeline(ClinicalPipelineFactory.java:132)
at
edu.utah.porc.chartreview.ctakes.ClinicalPipelineFactory.getDefaultPipeline(ClinicalPipelineFactory.java:71)
at
edu.utah.porc.chartreview.ctakes.ClinicalPipelineFactory.main(ClinicalPipelineFactory.java:244)
I am very new to ctakes and I realized there are lots of setups need to be done
but not sure if this is related to anything amiss?
The web app is a spring/maven project. I've put in all the ctakes dependencies
and got over the compiling. Above was a run time error.
Thanks in adance for any help,
Ben
801-587-7751
