Great to hear! Let me know and please feel free to issue pull requests, and issues, etc.
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Chris Mattmann, Ph.D. Chief Architect Instrument Software and Science Data Systems Section (398) NASA Jet Propulsion Laboratory Pasadena, CA 91109 USA Office: 168-519, Mailstop: 168-527 Email: [email protected] WWW: http://sunset.usc.edu/~mattmann/ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Adjunct Associate Professor, Computer Science Department University of Southern California, Los Angeles, CA 90089 USA ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ -----Original Message----- From: Ben Yu <[email protected]> Reply-To: "[email protected]" <[email protected]> Date: Friday, February 26, 2016 at 12:57 PM To: "[email protected]" <[email protected]> Subject: RE: ctakes our existing web application >Oh beautiful! Thank you Chris. Exactly the direction I was going to. I'll >dive into it ... > >Thanks, >ben > >-----Original Message----- >From: Mattmann, Chris A (3980) [mailto:[email protected]] >Sent: Friday, February 26, 2016 1:54 PM >To: [email protected] >Subject: Re: ctakes our existing web application > >Hey there, > >You may want to look at Shangridocs, which provides cTAKES as a REST >service via Tika: > >http://github.com/chrismattmann/shangridocs.git > >Happy to help get you started. > >Cheers, >Chris > >++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ >Chris Mattmann, Ph.D. >Chief Architect >Instrument Software and Science Data Systems Section (398) NASA Jet >Propulsion Laboratory Pasadena, CA 91109 USA >Office: 168-519, Mailstop: 168-527 >Email: [email protected] >WWW: http://sunset.usc.edu/~mattmann/ >++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ >Adjunct Associate Professor, Computer Science Department University of >Southern California, Los Angeles, CA 90089 USA >++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ > > > > > >-----Original Message----- >From: Ben Yu <[email protected]> >Reply-To: "[email protected]" <[email protected]> >Date: Friday, February 26, 2016 at 12:52 PM >To: "[email protected]" <[email protected]> >Subject: ctakes our existing web application > >>Hi group, >>We started to look at options to integrate ctakes into our existing web >>app and started the experiment on the ClinicalPipelineFactory class. I >>can run it with different engine descriptions and see the outputs >>without doing any modifications. But when I create my own class in my >>web app and follow the same logic, I got this error: >>Exception in thread "main" java.lang.IllegalArgumentException: URI is >>not hierarchical >> at java.io.File.<init>(File.java:418) >> at >>org.apache.ctakes.lvg.ae.LvgAnnotator.createAnnotatorDescription(LvgAnn >>ota >>tor.java:565) >> at >>edu.utah.porc.chartreview.ctakes.ClinicalPipelineFactory.getTokenProces >>sin >>gPipeline(ClinicalPipelineFactory.java:132) >> at >>edu.utah.porc.chartreview.ctakes.ClinicalPipelineFactory.getDefaultPipe >>lin >>e(ClinicalPipelineFactory.java:71) >> at >>edu.utah.porc.chartreview.ctakes.ClinicalPipelineFactory.main(ClinicalP >>ipe >>lineFactory.java:244) >> >>I am very new to ctakes and I realized there are lots of setups need to >>be done but not sure if this is related to anything amiss? >> >>The web app is a spring/maven project. I've put in all the ctakes >>dependencies and got over the compiling. Above was a run time error. >> >>Thanks in adance for any help, >>Ben >>801-587-7751 >> >
