OK, I've updated the wiki to say you prefer 900 :) Task TAVERNA-900 includes all of the 5 (now 6!) CWL sub-tasks - or a selection of those. We never intended for the GSOC student to complete all of those, but completing more than one task would be brilliant!
You can work on your project proposal and detail what work you are considering to focus on, in which order. Of course with more tasks you will need to think a bit more about milestones, and declare which tasks would be optional if you have enough time (and likewise what could be skipped if you run short!). GSOC students - your proposal and tasks does not have to match the Jira description - it is better if it doesn't and show what you have already investigated and planned! But it's OK if the first part of the project is to investigate different solutions/libraries and try out some quick manual prototypes. On 14 March 2016 at 20:14, Willy Aguirre <[email protected]> wrote: > Hi Stian > > I am little confused =/ > https://cwiki.apache.org/confluence/display/TAVERNADEV/2016-03+GSOC+2016 > I prefer to do task taverna-900 > > Regards, > Willy > > 2016-03-14 12:30 GMT-05:00 Stian Soiland-Reyes <[email protected]>: > >> Save to CWL would be done as an "Export to CWL" within the SCUFL2 >> libraries. I don't think we need to focus on the GUI side yet as that >> should be trivial - but integration with the tavtool library would be >> great! (See the newest release email) >> >> >> So given a t2flow input (or Taverna 3 Workflow Bundle) the output >> should look somewhat like the YAML examples from CWL: >> >> >> https://github.com/common-workflow-language/workflows/tree/master/workflows/hello >> >> >> >> On 14 March 2016 at 13:59, Willy Aguirre <[email protected]> wrote: >> > thanks!! =D >> > >> > Hi Stian about >> https://github.com/apache/incubator-taverna-language/tree/master/taverna-scufl2-examples >> > >> > >> > Is it idea to export to CWL or save to as cwl (yaml) >> > >> > https://gist.github.com/marti1125/4339ed5e595fc8fec19b (xml) >> > >> > I'm trying this https://taverna.incubator.apache.org/download/language/ >> > >> > Cheers!! >> > Willy >> > >> > 2016-03-14 7:17 GMT-05:00 Stian Soiland-Reyes <[email protected]>: >> > >> >> In Taverna 2.5, Soaplab is only part of the "Bioinformatics" and >> >> "Enterprise" editions. >> >> >> >> If you installed the "Core" edition you can use Advanced -> Updates and >> >> Plugins in the menu, then [Find new plugins] to install the >> "Bioinformatics >> >> services". After a restart you should have Soaplab support. >> >> >> >> >> >> >> >> >> >> >> >> On 14 March 2016 at 06:32, Willy Aguirre <[email protected]> wrote: >> >> >> >> > Hi! I am trying to understand the tutorial but in the part of import >> >> > services does not exist soaplab >> >> > >> >> > how to add as a new plugin >> >> > >> >> > https://github.com/apache/incubator-taverna-plugin-bioinformatics >> >> > >> >> > >> >> > >> >> > ** >> >> > Cheers! >> >> > >> >> > >> >> > 2016-03-13 12:54 GMT-05:00 Alan Williams <[email protected]>: >> >> > >> >> >> On 13-Mar-16 15:23, Willy Aguirre wrote: >> >> >> >> >> >>> could you give me some steps? I'm reading about CWL >> >> >>> >> >> >> >> >> >> I think the easiest thing may be to look at a very simple CWL >> workflow >> >> >> and compare it to a simple workflow in SCUFL2. >> >> >> >> >> >> A workflow for echoing the input parameter is at >> >> >> >> >> >> >> >> >> >> >> >> https://github.com/common-workflow-language/workflows/blob/master/workflows/hello/hello-param.cwl >> >> >> >> >> >> A similar SCUFL2 workflow is in >> >> >> >> >> >> >> >> >> >> >> >> https://github.com/apache/incubator-taverna-language/blob/master/taverna-scufl2-examples/examples/helloanyone.wfbundle >> >> >> >> >> >> or the JSON may be easier to understand: >> >> >> >> >> >> >> >> >> >> >> >> https://github.com/apache/incubator-taverna-language/blob/master/taverna-scufl2-examples/examples/helloanyone.json >> >> >> >> >> >> Alan >> >> >> >> >> > >> >> > >> >> > >> >> > -- >> >> > Willy Aguirre | @willrre >> >> > Blog: http://osgux.tumblr.com/ >> >> > Mozilla Rep: https://reps.mozilla.org/u/Willy/ >> >> > Mozilla Hispano - Willyaguirre >> >> > <https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre> >> >> > >> >> >> >> >> >> >> >> -- >> >> Stian Soiland-Reyes >> >> Apache Taverna (incubating), Apache Commons RDF (incubating) >> >> http://orcid.org/0000-0001-9842-9718 >> >> >> > >> > >> > >> > -- >> > Willy Aguirre | @willrre >> > Blog: http://osgux.tumblr.com/ >> > Mozilla Rep: https://reps.mozilla.org/u/Willy/ >> > Mozilla Hispano - Willyaguirre >> > <https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre> >> >> >> >> -- >> Stian Soiland-Reyes >> Apache Taverna (incubating), Apache Commons RDF (incubating) >> http://orcid.org/0000-0001-9842-9718 >> > > > > -- > Willy Aguirre | @willrre > Blog: http://osgux.tumblr.com/ > Mozilla Rep: https://reps.mozilla.org/u/Willy/ > Mozilla Hispano - Willyaguirre > <https://www.mozilla-hispano.org/documentacion/Usuario:Willyaguirre> -- Stian Soiland-Reyes Apache Taverna (incubating), Apache Commons RDF (incubating) http://orcid.org/0000-0001-9842-9718
