As I understand it, yes, we're blatantly in violation, but bundling the JRE into the installer is also in violation. Again, as I understand it, if we bundle JRE with Freenet, we should try to ensure that it is not usable by other applications.
I don't understand where is the problem. What installer are you using? If only the installer is a problem then distribute the program in a zip file or use another installer like nullsoft any many other free installers that are on the net.
And what files from http://freenetproject.org/snapshots/ are in violation of Sun Microsystems'copyright?
In the worst case you could only distribute the source code for every user to compile but that wouldn't be too nice because java sdk is a big download. You can also distribute compiled versions over freenet (published "anonymously" :) ) so there will be problems only for the first install and not for the updates (make the update program read the files from a SSK).
Gcj is a solution to produce executable files...but not for some freenet features....probably.
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