Wow. Lots of stuff happening since I logged out.

Wanted to say before actually getting to all the recent emails on this
thread that Tim with respect to your original post about training wheels, I
was + oo. Found it incredibly thoughtful/thought provoking and
introspective. Part of it might of been that I learned on training wheels
and did so successfully in rather short order. [not actual sure but think
it's a great approach and probably wouldn't fix that working system....the
teacher on the other hand probably has a profound effect on the learners
maintaining of said training wheels for too long etc].

-->S.G.

On Thu, May 5, 2016 at 9:09 AM, David Martin (Staff) <
[email protected]> wrote:

> I've not used xlstat. I do use Excel frequently for quick and dirty
> things, and I understand it's limitations, and where it does things better
> than R/RStudio. [1] I'm also one of the local R champions/gurus.
>
>
> Most of my research colleagues use Excel as that has been the easiest way
> for them to get at the results they want. It isn't big or clever to
> disrespect them or their competence. What we should be doing is
> demonstrating ways to go beyond what they can do, or to do it with more
> robustness, or to do it faster and repeatable, or usually a combination of
> all three. That doesn't mean putting Excel down. There are enough Gotcha's
> with R (students missing missing data and calculating across factors
> instead of numerical values for example, on a parallel with Excel's date
> handling train wreck).
>
>
> We don't need to mock or put folk down. We just show them what we do, and
> explain why we do it, and help them learn how to do it that way. There is a
> learning curve and students will require some incentive to get over the
> 'activation energy' and into a new way of working. Typically we enforce
> that at undergrad level by requiring they use R for reports and submit
> source code with it. This forces them to climb the cliff (as it were), and
> then realise how quick it is to perform exploratory analyses or plots once
> your data is in correctly.
>
>
> If you want to compare Excel/R (for example) then maybe there should be a
> set of exercises that demonstrate the difference.
>
>
> E.g. A data frame of three continuous variables x,y,z
>
> Plot X against Y then put a ring around the top 10 values by z
>
>
> We can get along without inflammatory zealotry. There are folk who have
> built robust and reproducible piplelines with Word and Excel. What we are
> teaching isn't so much software as a way of thinking.
>
>
> [1] Adds fuel to the fire.. there are some but there aren't many.
>
>
> Dr David Martin
> Lecturer in Bioinformatics
> College of Life Sciences
> University of Dundee
>
>
>
> ------------------------------
> *From:* Discuss <[email protected]> on behalf
> of Philip Rosenfield <[email protected]>
> *Sent:* 05 May 2016 13:53
> *To:* Bert Overduin
> *Cc:* [email protected]; Dirk Eddelbuettel
> *Subject:* Re: [Discuss] Word and PowerPoint "all wrong"?
>
> I’ve been working with a professor who likes excel (+xlstat extension) for
> students learning to do statistical analysis because it allows them a quick
> feedback loop from their data to visualizing a result. It allows students
> to try different regressions etc, and see the differences, where command
> line stats packages separates that knowledge. In other words, could Excel
> be a good a sandbox for learning, and the question would become when and
> how to transition the students toward methods taught in SC/DC.
>
> I’d be interested to hear the groups’ thoughts on that.
>
> -Phil
>
> On May 5, 2016, at 8:30 AM, Bert Overduin <[email protected]> wrote:
>
> I couldn't have said it better, Alistair!
>
> On Thu, May 5, 2016 at 12:59 PM, GRANT Alistair <[email protected]>
> wrote:
>
>> Hi,
>>
>> >>It sounds like they were shunted into an R course they didn't care
>> about.
>>
>> If you read the comment, I don’t think this was the case, I think the
>> major point here is that the session (instructor/helper or material) gave
>> off an impression that they were an idiot for using Excel - This is not
>> conducive to a good learning environment - no matter an instructors
>> viewpoint they have to ensure students can learn. This is the impression I
>> have been getting from this whole thread of conversation - “If you don’t
>> do it a way I consider to be good or completely change how you work to
>> that way, you are an idiot” - especially in the use of evocative words
>> like “terrifies”. People have to exist in the real world and in many
>> places sudden change just isn’t possible so making small changes to move
>> towards a more efficient or “better” path is all they can do.
>>
>> >>We should all take responsibility for the way we market our courses. If
>> >>someone is perfectly happy with Excel, then I might wonder what they're
>> >>doing in academia, but I wouldn't push them to do an R course.
>>
>>
>> I think that this statement is utterly out of order - one) the quote prior
>> to this never claimed to be perfectly happy and two) who are any of us to
>> judge who should or shouldn’t be in academia - you don’t know what they
>> are using it for, what their background is or anything to contribute to
>> saying whether anyone should be academia.
>>
>> My understanding of SWC was that is was about improving things, and
>> teaching about process and concept with grounding in tools such as Git,
>> etc, but lately it appears in some cases that the Git part is becoming
>> more important that the version control - there are many version control
>> systems with advantages and disadvantages - just getting someone to
>> realise the usefulness of any of these is good and getting them to start
>> is even better. There appears to be an undercurrent of “fundamentalism”
>> forming which reads as do it my way as your way is just wrong.
>>
>> I am reminded of what I teach students about software development:
>> If you the developer make business decisions about your client’s business,
>> then you are doing something wrong.
>> People have to make their own choices and change their own ways of
>> working, at these courses, we can show people what may be a new approach,
>> but if we denigrate their prior knowledge or call them idiots then we lose
>> any willingness to work with us and they will close down receptiveness.
>>
>> Regards,
>> Alistair
>> -----------------------------------------------
>> Alistair Grant
>> EPCC
>> Rm 2403
>> 0131-650-5028
>> -----------------------------------------------
>>
>>
>> Thought to be thought about:
>> Be more concerned with your character than your reputation,
>> because your character is what you really are,
>> while your reputation is merely what others think you are. (John Wooden)
>>
>>
>>
>>
>>
>>
>>
>>
>> On 05/05/2016 12:24, "Timothy Rice" <[email protected]> wrote:
>>
>> >> It isn't productive if they think they're being patronised then go
>> >> on the defensive, get irritated or switch off altogether. As an
>> >> example, an attendee at a SWC workshop in September 2014 commented:
>> >>
>> >> >I never had any formal instruction in Excel, and instead have
>> >> >clawed my way into a decent working knowledge of it over the last
>> >> >almost two decades.  I am very proud of what I can do with it, and
>> >> >I have found it of great use, but I know there is a ton I don't
>> >> >know, so I was looking forward to that session. However, that
>> >> >session ended up being bitterly offensive. The basic message being
>> >> >conveyed was "you are an idiot for using Excel to do anything
>> >> >expect to put data into R, and an even worse idiot if you do
>> >> >things to make data comprehensible to a human."  There were snide
>> >> >cartoons, there was condescension...  It was infuriating. ...
>> >> >By the end I was livid, tired, and very stressed.
>> >
>> >
>> >
>> >More awareness around the shortcomings of Excel can be advocated as a way
>> >to attract people into R courses, but if they only find out about it
>> after
>> >they sign up then you've falsely advertised what you're teaching.
>> >
>> >You can't force someone to take training wheels off, it just terrifies
>> and
>> >confuses them. You can only show them videos of people doing stunts
>> >without
>> >training wheels, and help them find their balance and pick them up and
>> >give
>> >them a hug when they fall -- after they agree to take off their own
>> >training wheels.
>> >
>> >~ Tim
>> >
>> >_______________________________________________
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>> >[email protected]
>> >
>> http://lists.software-carpentry.org/mailman/listinfo/discuss_lists.softwar
>> >e-carpentry.org
>>
>> --
>> The University of Edinburgh is a charitable body, registered in
>> Scotland, with registration number SC005336.
>>
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>
>
>
> --
> Bert Overduin, PhD
> TRAINING AND OUTREACH BIOINFORMATICIAN
> [email protected]
> orcid.org/0000-0002-5281-8838
>
> EDINBURGH GENOMICS
> The University of Edinburgh
> Ashworth Laboratories
> The King's Buildings
> Charlotte Auerbach Road
> Edinburgh EH9 3FL
> Scotland, United Kingdom
>
> tel. +44(0)1316507403
> http://genomics.ed.ac.uk
> The University of Edinburgh is a charitable body, registered in
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