Hi Anwar,
having a look at your files, it seems that you do not call
*gridManager.init();
*in your *test_1pfv.cc *file*.
*If this does not help, please also run your test case without using mpirun,
i.e. simply execute ./test_1pbox ./test_1pfv.input
You should also have a look at the grid that is generated for your
parameters,
for example by using the test "*test_gridmanager_cake" *
*(in the folder dumux/test/io/gridmanager) *
Furthermore, you could also try to use UGGrid instead of ALUGrid.
***
*Regards,
Martin*
*
On 10/08/2018 02:09 PM, Anwar Al Assadi wrote:
Hi Martin, Hi all,
thanks for your answer, but i tried now both schems, and i'm still
getting the same error message.
Best,
Anwar
**********
mpirun -np 1 ./test_1pbox ./test_1pfv.input
### # # # #
# # # # ## ## # # #
# # # # # # # # # # #
### ## # # ##
Dune for Multi-{ Phase,
Component,
Scale,
Physics,
...} flow and transport in porous media
[eu-login-10-ng:03667] *** Process received signal ***
[eu-login-10-ng:03667] Signal: Segmentation fault (11)
[eu-login-10-ng:03667] Signal code: Address not mapped (1)
[eu-login-10-ng:03667] Failing at address: 0x80
[eu-login-10-ng:03667] [ 0]
/lib64/libpthread.so.0(+0xf6d0)[0x2b2e51a706d0]
[eu-login-10-ng:03667] [ 1]
./test_1pbox(_ZNK4Dune9ALU3dGridILi3ELi3ELNS_20ALU3dGridElementTypeE7ENS_14ALUGridMPICommEE12leafIndexSetEv+0x0)[0x678aa0]
[eu-login-10-ng:03667] [ 2]
./test_1pbox(_ZN4Dune35MultipleCodimMultipleGeomTypeMapperINS_8GridViewINS_23ALU3dLeafGridViewTraitsIKNS_7ALUGridILi3ELi3ELNS_18ALUGridElementTypeE1ELNS_21ALUGridRefinementTypeE1ENS_14ALUGridMPICommEEELNS_21PartitionIteratorTypeE4EEEEENS_4Impl14MCMGFailLayoutEEC1ERKSB_RKSt8functionIFmNS_12GeometryTypeEiEE+0x25)[0x67aa35]
[eu-login-10-ng:03667] [ 3]
./test_1pbox(_ZN5Dumux18BaseFVGridGeometryINS_17BoxFVGridGeometryIdN4Dune8GridViewINS2_23ALU3dLeafGridViewTraitsIKNS2_7ALUGridILi3ELi3ELNS2_18ALUGridElementTypeE1ELNS2_21ALUGridRefinementTypeE1ENS2_14ALUGridMPICommEEELNS2_21PartitionIteratorTypeE4EEEEELb0ENS_28BoxDefaultGridGeometryTraitsISD_NS_19DefaultMapperTraitsISD_NS2_35MultipleCodimMultipleGeomTypeMapperISD_NS2_4Impl14MCMGFailLayoutEEESJ_EEEEEESD_SL_EC1ERKSD_+0x48)[0x67ece8]
[eu-login-10-ng:03667] [ 4] ./test_1pbox(main+0x19f)[0x5d175f]
[eu-login-10-ng:03667] [ 5]
/lib64/libc.so.6(__libc_start_main+0xf5)[0x2b2e51c9f445]
[eu-login-10-ng:03667] [ 6] ./test_1pbox[0x5d5bb6]
[eu-login-10-ng:03667] *** End of error message ***
-------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
-------------------------------------------------------
--------------------------------------------------------------------------
mpirun noticed that process rank 0 with PID 0 on node eu-login-10-ng
exited on signal 11 (Segmentation fault).**************
*Gesendet:* Freitag, 05. Oktober 2018 um 13:32 Uhr
*Von:* "Martin Schneider" <[email protected]>
*An:* "DuMuX User Forum" <[email protected]>, "Anwar Al
Assadi" <[email protected]>
*Betreff:* Re: [DuMuX] Parallel / Grid (cake piece)
Dear Anwar,
do you get the same problem for the box scheme and for the
cell-centered (TPFA) scheme,
or did you only try it with the Box scheme?
Regards,
Martin
On 10/05/2018 11:00 AM, Anwar Al Assadi wrote:
Hello everyone,
I'm trying to run my code on a cluster, but I got a segmentation
fault. I already ran the test_1pcctpfa problem parallel, but now
after changing the grid to 3 d (cake piece, with the cake creator)
something seems wrong. Did someone already have this problem? or
do you have a hint for me? I attached my code and the error message.
Thanks a lot!
Best,
Anwar
DuMux : dumux-course-2018
"""""""""
mpirun -np 1 ./test_1pcctpfa ./test_1pfv.input
You idiot! You signed the order to destroy Earth!
- Douglas Adams, HGttG
[eu-login-13-ng:15924] *** Process received signal ***
[eu-login-13-ng:15924] Signal: Segmentation fault (11)
[eu-login-13-ng:15924] Signal code: Address not mapped (1)
[eu-login-13-ng:15924] Failing at address: 0x80
[eu-login-13-ng:15924] [ 0]
/lib64/libpthread.so.0(+0xf6d0)[0x2b69fa3006d0]
[eu-login-13-ng:15924] [ 1]
./test_1pcctpfa(_ZNK4Dune9ALU3dGridILi3ELi3ELNS_20ALU3dGridElementTypeE7ENS_14ALUGridMPICommEE12leafIndexSetEv+0x0)[0x609c90]
[eu-login-13-ng:15924] [ 2]
./test_1pcctpfa(_ZN4Dune35MultipleCodimMultipleGeomTypeMapperINS_8GridViewINS_23ALU3dLeafGridViewTraitsIKNS_7ALUGridILi3ELi3ELNS_18ALUGridElementTypeE1ELNS_21ALUGridRefinementTypeE1ENS_14ALUGridMPICommEEELNS_21PartitionIteratorTypeE4EEEEENS_4Impl14MCMGFailLayoutEEC1ERKSB_RKSt8functionIFmNS_12GeometryTypeEiEE+0x25)[0x60bc25]
[eu-login-13-ng:15924] [ 3]
./test_1pcctpfa(_ZN5Dumux20CCTpfaFVGridGeometryIN4Dune8GridViewINS1_23ALU3dLeafGridViewTraitsIKNS1_7ALUGridILi3ELi3ELNS1_18ALUGridElementTypeE1ELNS1_21ALUGridRefinementTypeE1ENS1_14ALUGridMPICommEEELNS1_21PartitionIteratorTypeE4EEEEELb0ENS_31CCTpfaDefaultGridGeometryTraitsISC_NS_19DefaultMapperTraitsISC_NS1_35MultipleCodimMultipleGeomTypeMapperISC_NS1_4Impl14MCMGFailLayoutEEESI_EEEEEC2ERKSC_+0x54)[0x61b8f4]
[eu-login-13-ng:15924] [ 4] ./test_1pcctpfa(main+0x19b)[0x56f48b]
[eu-login-13-ng:15924] [ 5]
/lib64/libc.so.6(__libc_start_main+0xf5)[0x2b69fa52f445]
[eu-login-13-ng:15924] [ 6] ./test_1pcctpfa[0x573ae6]
[eu-login-13-ng:15924] *** End of error message ***
-------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
-------------------------------------------------------
--------------------------------------------------------------------------
mpirun noticed that process rank 0 with PID 0 on node
eu-login-13-ng exited on signal 11 (Segmentation
fault)."""""""""""""""""""""""
_______________________________________________
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--
M.Sc. Martin Schneider
University of Stuttgart
Institute for Modelling Hydraulic and Environmental Systems
Department of Hydromechanics and Modelling of Hydrosystems
Pfaffenwaldring 61
D-70569 Stuttgart
Tel: (+49) 0711/ 685-69159
Fax: (+49) 0711/ 685-60430
E-Mail:[email protected]
--
M.Sc. Martin Schneider
University of Stuttgart
Institute for Modelling Hydraulic and Environmental Systems
Department of Hydromechanics and Modelling of Hydrosystems
Pfaffenwaldring 61
D-70569 Stuttgart
Tel: (+49) 0711/ 685-69159
Fax: (+49) 0711/ 685-60430
E-Mail: [email protected]
_______________________________________________
Dumux mailing list
[email protected]
https://listserv.uni-stuttgart.de/mailman/listinfo/dumux
