Re: [DuMuX] set_singular_limit and parallel execution

lc Wed, 30 Jan 2019 04:20:26 -0800

Here is the log,


Thank you,

Lorenzo


On 30.01.2019 14:53, Bernd Flemisch wrote:

Are you sure that dunecontrol finds MPI? Can you post the output ofdunecontrol?
Bernd

On 01/30/2019 12:46 PM, lc wrote:
Good morning,
I updated the virtual machine as you may see from the lscpu_new fileattached.
Then, I try to run both sequential 2p test_impesadaptive and 2pimplicit test_box2p (input file attached) with 1 4 and 8 coresstraight from the Dumux 2.12 test suite without any othermodification (just the grid in the input file).
I still get the same behaviour:

1 core -> 302 s

4 cores -> 337 s (output attached)

8 cores -> 470 s
It seems that as you noted, these processes do not communicate eachother. Do you agree?
These testcases, should be fully parallel, so what's wrong?


Thank you,


P.S. I also have other pending questions ...


Kind regards,

Lorenzo



On 24.01.2019 14:42, Flemisch, Bernd wrote:
Timo is of course right. Nevertheless, your parallel output showsthat the program isn't executed in a distributed way. It simplyexecutes the full sequential code on four processes that don'tcommunicate with each other. The four processes occupy two physicalcores resulting in a degradation in performance. The sequential (inthe sense of temporal discretization and coupling) 2p2c model is notparallel. The fully implicit ones are parallel, also the sequential2p model is parallel. Let us know if you experience the sameproblems with a truly parallel model. If you do so, please considerTimo's comment that you choose a number of processes that is less orequal than the number of physical cores on your machine.
Kind regards

Bernd


--
_______________________________________________________________

Bernd Flemisch                         phone: +49 711 685 69162
IWS, Universität Stuttgart             fax:   +49 711 685 60430
Pfaffenwaldring 61            email: [email protected]
D-70569 Stuttgart            url: www.hydrosys.uni-stuttgart.de
_______________________________________________________________
------------------------------------------------------------------------
*Von:* Dumux <[email protected]> im Auftragvon Timo Koch <[email protected]>
*Gesendet:* Donnerstag, 24. Januar 2019 11:01:56
*An:* DuMuX User Forum; lc
*Betreff:* Re: [DuMuX] set_singular_limit and parallel execution

Hi Lorenzo,
you can't scale well to 4 cores because your CPU only has two cores.The two additional ones are only hyperthreads. Please repeat thesame numerical experiment on a machine with more cores.
Timo

On 24.01.19 10:37, lc wrote:
On 18.01.2019 21:52, Flemisch, Bernd wrote:
Can you please post the complete output for the run with 4 cores?Plus the initial vtk files? And, pretty please with sugar on top,the number of physical cores on your machine?
Good morning,
I enclose the requested files for the sequential (1 processor) andparallel (4 processors) simulations plus some detail on my machine.
Thanks for help,

Lorenzo


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--
_______________________________________________________________

Timo Koch                              phone: +49 711 685 64676
IWS, Universität Stuttgart             fax:   +49 711 685 60430
Pfaffenwaldring 61        email:[email protected]
D-70569 Stuttgart            url:www.hydrosys.uni-stuttgart.de
_______________________________________________________________
--
_______________________________________________________________

Bernd Flemisch                         phone: +49 711 685 69162
IWS, Universität Stuttgart             fax:   +49 711 685 60430
Pfaffenwaldring 61            email:[email protected]
D-70569 Stuttgart            url:www.hydrosys.uni-stuttgart.de
_______________________________________________________________

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 * MPI , Message Passing Interface library
   Parallel programming on multiple processors
 * LATEX , Type setting system
   To generate the documentation
 * UnixCommands , Some common Unix commands
   To generate the documentation with LaTeX
 * Doxygen , Class documentation generator , <www.doxygen.org>
   To generate the class documentation from C++ sources
 * PkgConfig , Unified interface for querying installed libraries
   To find Dune module dependencies
 * BLAS , fast linear algebra routines
 * Threads , Multi-threading library
 * LAPACK , fast linear algebra routines
 * QuadMath , GCC Quad-Precision library
 * Inkscape , converts SVG images , <www.inkscape.org>
   To generate the documentation with LaTeX
 * TBB , Threading Building Blocks library
   Parallel programming on multi-core processors
 * PythonInterp
 * PythonLibs

-- The following OPTIONAL packages have not been found:

 * Sphinx , Documentation generator , <www.sphinx-doc.org>
   To generate the documentation from CMake and Python sources
 * GMP , GNU multi-precision library including the C++ bindings GMPxx
   Multi-precision quadrature rules, basis function evaluation etc.
 * Vc , C++ Vectorization library , <https://github.com/VcDevel/Vc>
   For use of SIMD instructions

-- Configuring done
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cmake   \ --enable-parallel 
"-Ddune-common_DIR=/home/lorenzo/DUMUX/dune-common/build-cmake" 
-DCMAKE_CXX_FLAGS=" -Wall -Wunused -Wmissing-include-dirs -Wcast-align 
-Wno-sign-compare -Wno-unused-parameter -fno-strict-aliasing -fstrict-overflow 
-fno-finite-math-only -O3 -march=native -DNDEBUG=1" 
"/home/lorenzo/DUMUX/dune-istl"
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doxystyle file
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/home/lorenzo/DUMUX/dune-common/doc/doxygen/doxygen-macros for Doxygen
-- Adding custom target for config.h generation
-- 
-- The following OPTIONAL packages have been found:

 * MPI , Message Passing Interface library
   Parallel programming on multiple processors
 * LATEX , Type setting system
   To generate the documentation
 * UnixCommands , Some common Unix commands
   To generate the documentation with LaTeX
 * Doxygen , Class documentation generator , <www.doxygen.org>
   To generate the class documentation from C++ sources
 * PkgConfig , Unified interface for querying installed libraries
   To find Dune module dependencies
 * LAPACK , fast linear algebra routines
 * QuadMath , GCC Quad-Precision library
 * Inkscape , converts SVG images , <www.inkscape.org>
   To generate the documentation with LaTeX
 * TBB , Threading Building Blocks library
   Parallel programming on multi-core processors
 * PythonInterp
 * PythonLibs
 * SuiteSparse
 * Threads , Multi-threading library

-- The following REQUIRED packages have been found:

 * dune-common

-- The following OPTIONAL packages have not been found:

 * Sphinx , Documentation generator , <www.sphinx-doc.org>
   To generate the documentation from CMake and Python sources
 * GMP , GNU multi-precision library including the C++ bindings GMPxx
   Multi-precision quadrature rules, basis function evaluation etc.
 * Vc , C++ Vectorization library , <https://github.com/VcDevel/Vc>
   For use of SIMD instructions
 * METIS
 * ParMETIS
 * SuperLU , Supernodal LU
   Direct solver for linear system, based on LU decomposition
 * ARPACK , ARnoldi PACKage
   Solve large scale eigenvalue problems
 * ARPACKPP , ARPACK++
   C++ interface for ARPACK

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cmake   \ --enable-parallel 
"-Ddune-common_DIR=/home/lorenzo/DUMUX/dune-common/build-cmake" 
-DCMAKE_CXX_FLAGS=" -Wall -Wunused -Wmissing-include-dirs -Wcast-align 
-Wno-sign-compare -Wno-unused-parameter -fno-strict-aliasing -fstrict-overflow 
-fno-finite-math-only -O3 -march=native -DNDEBUG=1" 
"/home/lorenzo/DUMUX/dune-geometry"
-- Dependencies for dune-geometry: dune-common (>= 2.6)
-- I could not find the htlatex command.
-- I could not find the pdftops command.
-- Could NOT find Sphinx (missing:  SPHINX_EXECUTABLE) 
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-- Performing tests specific to dune-common from file 
/home/lorenzo/DUMUX/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- Set Minimal Debug Level to 4
-- A library with BLAS API found.
-- A library with LAPACK API found.
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GMP_HEADER_WORKS GMPXX_LIB_WORKS) 
-- Library dir: TBB_LIBRARY_DIR-NOTFOUND
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creating doxygen stuff.
-- using /home/lorenzo/DUMUX/dune-common/doc/doxygen/Doxystyle to create 
doxystyle file
-- using C macro definitions from 
/home/lorenzo/DUMUX/dune-common/doc/doxygen/doxygen-macros for Doxygen
-- Adding custom target for config.h generation
-- 
-- The following OPTIONAL packages have been found:

 * MPI , Message Passing Interface library
   Parallel programming on multiple processors
 * LATEX , Type setting system
   To generate the documentation
 * UnixCommands , Some common Unix commands
   To generate the documentation with LaTeX
 * Doxygen , Class documentation generator , <www.doxygen.org>
   To generate the class documentation from C++ sources
 * PkgConfig , Unified interface for querying installed libraries
   To find Dune module dependencies
 * BLAS , fast linear algebra routines
 * Threads , Multi-threading library
 * LAPACK , fast linear algebra routines
 * QuadMath , GCC Quad-Precision library
 * Inkscape , converts SVG images , <www.inkscape.org>
   To generate the documentation with LaTeX
 * TBB , Threading Building Blocks library
   Parallel programming on multi-core processors
 * PythonInterp
 * PythonLibs

-- The following REQUIRED packages have been found:

 * dune-common

-- The following OPTIONAL packages have not been found:

 * Sphinx , Documentation generator , <www.sphinx-doc.org>
   To generate the documentation from CMake and Python sources
 * GMP , GNU multi-precision library including the C++ bindings GMPxx
   Multi-precision quadrature rules, basis function evaluation etc.
 * Vc , C++ Vectorization library , <https://github.com/VcDevel/Vc>
   For use of SIMD instructions

-- Configuring done
-- Generating done
-- Build files have been written to: 
/home/lorenzo/DUMUX/dune-geometry/build-cmake
--- calling make for dune-geometry ---
build directory: build-cmake
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[ 50%] Built target dunegeometry
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/home/lorenzo/DUMUX/dumux/optim.opts -----
cmake   \ --enable-parallel 
"-Ddune-common_DIR=/home/lorenzo/DUMUX/dune-common/build-cmake" 
"-Ddune-geometry_DIR=/home/lorenzo/DUMUX/dune-geometry/build-cmake" 
-DCMAKE_CXX_FLAGS=" -Wall -Wunused -Wmissing-include-dirs -Wcast-align 
-Wno-sign-compare -Wno-unused-parameter -fno-strict-aliasing -fstrict-overflow 
-fno-finite-math-only -O3 -march=native -DNDEBUG=1" 
"/home/lorenzo/DUMUX/dune-localfunctions"
-- Dependencies for dune-localfunctions: dune-geometry (>= 2.6)
-- Dependencies for dune-geometry: dune-common (>= 2.6)
-- I could not find the htlatex command.
-- I could not find the pdftops command.
-- Could NOT find Sphinx (missing:  SPHINX_EXECUTABLE) 
-- Searching for macro file 'DuneCommonMacros' for module 'dune-common'.
-- Performing tests specific to dune-common from file 
/home/lorenzo/DUMUX/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- Set Minimal Debug Level to 4
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Could NOT find GMP (missing:  GMPXX_INCLUDE_DIR GMP_LIB GMPXX_LIB 
GMP_HEADER_WORKS GMPXX_LIB_WORKS) 
-- Library dir: TBB_LIBRARY_DIR-NOTFOUND
-- defaulting TBB_CACHE_ALIGNED_ALLOCATOR_ALIGNMENT to 128
-- Setting dune-common_INCLUDE_DIRS=/home/lorenzo/DUMUX/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Searching for macro file 'DuneGeometryMacros' for module 'dune-geometry'.
-- No module specific tests perfomed for module 'dune-geometry' because macro 
file 'DuneGeometryMacros.cmake' not found in 
/home/lorenzo/DUMUX/dune-localfunctions/cmake/modules;/home/lorenzo/DUMUX/dune-geometry/cmake/modules;/home/lorenzo/DUMUX/dune-common/cmake/modules.
-- Setting dune-geometry_INCLUDE_DIRS=/home/lorenzo/DUMUX/dune-geometry
-- Setting dune-geometry_LIBRARIES=dunegeometry
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'dune-localfunctions'.
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macro file 'DuneLocalfunctionsMacros.cmake' not found in 
/home/lorenzo/DUMUX/dune-localfunctions/cmake/modules;/home/lorenzo/DUMUX/dune-geometry/cmake/modules;/home/lorenzo/DUMUX/dune-common/cmake/modules.
-- Using scripts from /home/lorenzo/DUMUX/dune-common/cmake/scripts for 
creating doxygen stuff.
-- using /home/lorenzo/DUMUX/dune-common/doc/doxygen/Doxystyle to create 
doxystyle file
-- using C macro definitions from 
/home/lorenzo/DUMUX/dune-common/doc/doxygen/doxygen-macros for Doxygen
-- Adding custom target for config.h generation
-- 
-- The following OPTIONAL packages have been found:

 * MPI , Message Passing Interface library
   Parallel programming on multiple processors
 * LATEX , Type setting system
   To generate the documentation
 * UnixCommands , Some common Unix commands
   To generate the documentation with LaTeX
 * Doxygen , Class documentation generator , <www.doxygen.org>
   To generate the class documentation from C++ sources
 * PkgConfig , Unified interface for querying installed libraries
   To find Dune module dependencies
 * BLAS , fast linear algebra routines
 * Threads , Multi-threading library
 * LAPACK , fast linear algebra routines
 * QuadMath , GCC Quad-Precision library
 * Inkscape , converts SVG images , <www.inkscape.org>
   To generate the documentation with LaTeX
 * TBB , Threading Building Blocks library
   Parallel programming on multi-core processors
 * PythonInterp
 * PythonLibs

-- The following REQUIRED packages have been found:

 * dune-common
 * dune-geometry

-- The following OPTIONAL packages have not been found:

 * Sphinx , Documentation generator , <www.sphinx-doc.org>
   To generate the documentation from CMake and Python sources
 * GMP , GNU multi-precision library including the C++ bindings GMPxx
   Multi-precision quadrature rules, basis function evaluation etc.
 * Vc , C++ Vectorization library , <https://github.com/VcDevel/Vc>
   For use of SIMD instructions

-- Configuring done
-- Generating done
-- Build files have been written to: 
/home/lorenzo/DUMUX/dune-localfunctions/build-cmake
--- calling make for dune-localfunctions ---
build directory: build-cmake
cmake --build . -- 
--- dune-localfunctions done ---
--- calling all for dune-uggrid ---
--- calling vcsetup for dune-uggrid ---
--- calling configure for dune-uggrid ---
----- using default flags $CONFIGURE_FLAGS from 
/home/lorenzo/DUMUX/dumux/optim.opts -----
cmake   \ --enable-parallel 
"-Ddune-common_DIR=/home/lorenzo/DUMUX/dune-common/build-cmake" 
-DCMAKE_CXX_FLAGS=" -Wall -Wunused -Wmissing-include-dirs -Wcast-align 
-Wno-sign-compare -Wno-unused-parameter -fno-strict-aliasing -fstrict-overflow 
-fno-finite-math-only -O3 -march=native -DNDEBUG=1" 
"/home/lorenzo/DUMUX/dune-uggrid"
-- Dependencies for dune-uggrid: dune-common
-- I could not find the htlatex command.
-- I could not find the pdftops command.
-- Could NOT find Sphinx (missing:  SPHINX_EXECUTABLE) 
-- Searching for macro file 'DuneCommonMacros' for module 'dune-common'.
-- Performing tests specific to dune-common from file 
/home/lorenzo/DUMUX/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- Set Minimal Debug Level to 4
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Could NOT find GMP (missing:  GMPXX_INCLUDE_DIR GMP_LIB GMPXX_LIB 
GMP_HEADER_WORKS GMPXX_LIB_WORKS) 
-- Library dir: TBB_LIBRARY_DIR-NOTFOUND
-- defaulting TBB_CACHE_ALIGNED_ALLOCATOR_ALIGNMENT to 128
-- Setting dune-common_INCLUDE_DIRS=/home/lorenzo/DUMUX/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Searching for macro file 'DuneUggridMacros' for module 'dune-uggrid'.
-- Performing tests specific to dune-uggrid from file 
/home/lorenzo/DUMUX/dune-uggrid/cmake/modules/DuneUggridMacros.cmake.
-- Adding custom target for config.h generation
-- 
-- The following OPTIONAL packages have been found:

 * LATEX , Type setting system
   To generate the documentation
 * UnixCommands , Some common Unix commands
   To generate the documentation with LaTeX
 * Doxygen , Class documentation generator , <www.doxygen.org>
   To generate the class documentation from C++ sources
 * PkgConfig , Unified interface for querying installed libraries
   To find Dune module dependencies
 * BLAS , fast linear algebra routines
 * Threads , Multi-threading library
 * LAPACK , fast linear algebra routines
 * QuadMath , GCC Quad-Precision library
 * Inkscape , converts SVG images , <www.inkscape.org>
   To generate the documentation with LaTeX
 * TBB , Threading Building Blocks library
   Parallel programming on multi-core processors
 * PythonInterp
 * PythonLibs
 * MPI , Message Passing Interface library
   Parallel programming on multiple processors

-- The following REQUIRED packages have been found:

 * dune-common

-- The following OPTIONAL packages have not been found:

 * Sphinx , Documentation generator , <www.sphinx-doc.org>
   To generate the documentation from CMake and Python sources
 * GMP , GNU multi-precision library including the C++ bindings GMPxx
   Multi-precision quadrature rules, basis function evaluation etc.
 * Vc , C++ Vectorization library , <https://github.com/VcDevel/Vc>
   For use of SIMD instructions

-- Configuring done
-- Generating done
-- Build files have been written to: /home/lorenzo/DUMUX/dune-uggrid/build-cmake
--- calling make for dune-uggrid ---
build directory: build-cmake
cmake --build . -- 
[ 17%] Built target low
[ 18%] Built target devices
[ 42%] Built target ug_gm3
[ 67%] Built target ug_gm2
[ 70%] Built target domS2
[ 72%] Built target domS3
[ 74%] Built target np3
[ 75%] Built target np2
[ 77%] Built target algebra3
[ 78%] Built target algebra2
[ 82%] Built target udm3
[ 87%] Built target udm2
[ 88%] Built target ugui3
[ 90%] Built target ugui2
[ 94%] Built target ugL
[ 97%] Built target ugS3
[100%] Built target ugS2
--- dune-uggrid done ---
--- calling all for dune-grid ---
--- calling vcsetup for dune-grid ---
--- calling configure for dune-grid ---
----- using default flags $CONFIGURE_FLAGS from 
/home/lorenzo/DUMUX/dumux/optim.opts -----
cmake   \ --enable-parallel 
"-Ddune-common_DIR=/home/lorenzo/DUMUX/dune-common/build-cmake" 
"-Ddune-geometry_DIR=/home/lorenzo/DUMUX/dune-geometry/build-cmake" 
"-Ddune-uggrid_DIR=/home/lorenzo/DUMUX/dune-uggrid/build-cmake" 
-DCMAKE_CXX_FLAGS=" -Wall -Wunused -Wmissing-include-dirs -Wcast-align 
-Wno-sign-compare -Wno-unused-parameter -fno-strict-aliasing -fstrict-overflow 
-fno-finite-math-only -O3 -march=native -DNDEBUG=1" 
"/home/lorenzo/DUMUX/dune-grid"
-- Dependencies for dune-grid: dune-geometry (>= 2.6)
-- Suggestions for dune-grid: dune-uggrid (>=2.6)
-- Dependencies for dune-geometry: dune-common (>= 2.6)
-- Dependencies for dune-uggrid: dune-common
-- I could not find the htlatex command.
-- I could not find the pdftops command.
-- Could NOT find Sphinx (missing:  SPHINX_EXECUTABLE) 
-- Searching for macro file 'DuneCommonMacros' for module 'dune-common'.
-- Performing tests specific to dune-common from file 
/home/lorenzo/DUMUX/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- Set Minimal Debug Level to 4
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Could NOT find GMP (missing:  GMPXX_INCLUDE_DIR GMP_LIB GMPXX_LIB 
GMP_HEADER_WORKS GMPXX_LIB_WORKS) 
-- Library dir: TBB_LIBRARY_DIR-NOTFOUND
-- defaulting TBB_CACHE_ALIGNED_ALLOCATOR_ALIGNMENT to 128
-- Setting dune-common_INCLUDE_DIRS=/home/lorenzo/DUMUX/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Searching for macro file 'DuneUggridMacros' for module 'dune-uggrid'.
-- Performing tests specific to dune-uggrid from file 
/home/lorenzo/DUMUX/dune-uggrid/cmake/modules/DuneUggridMacros.cmake.
-- Setting dune-uggrid_INCLUDE_DIRS=/home/lorenzo/DUMUX/dune-uggrid
-- Setting dune-uggrid_LIBRARIES=ugL;ugS2;ugS3
-- Searching for macro file 'DuneGeometryMacros' for module 'dune-geometry'.
-- No module specific tests perfomed for module 'dune-geometry' because macro 
file 'DuneGeometryMacros.cmake' not found in 
/home/lorenzo/DUMUX/dune-grid/cmake/modules;/home/lorenzo/DUMUX/dune-geometry/cmake/modules;/home/lorenzo/DUMUX/dune-uggrid/cmake/modules;/home/lorenzo/DUMUX/dune-common/cmake/modules.
-- Setting dune-geometry_INCLUDE_DIRS=/home/lorenzo/DUMUX/dune-geometry
-- Setting dune-geometry_LIBRARIES=dunegeometry
-- Searching for macro file 'DuneGridMacros' for module 'dune-grid'.
-- Performing tests specific to dune-grid from file 
/home/lorenzo/DUMUX/dune-grid/cmake/modules/DuneGridMacros.cmake.
-- Could NOT find METIS (missing:  METIS_INCLUDE_DIR METIS_LIBRARY 
HAVE_METIS_PARTGRAPHKWAY) 
-- Could NOT find ParMETIS (missing:  PARMETIS_INCLUDE_DIR PARMETIS_LIBRARY 
HAVE_PARMETIS) 
-- Checking for one of the modules 'psurface'
-- Checking for module 'psurface'
--   No package 'psurface' found
-- Could NOT find psurface (missing:  PSURFACE_INCLUDE_DIR PSURFACE_LIBRARY) 
-- Could NOT find AmiraMesh (missing:  AMIRAMESH_INCLUDE_DIR AMIRAMESH_LIBRARY) 
-- Using scripts from /home/lorenzo/DUMUX/dune-common/cmake/scripts for 
creating doxygen stuff.
-- using /home/lorenzo/DUMUX/dune-common/doc/doxygen/Doxystyle to create 
doxystyle file
-- using C macro definitions from 
/home/lorenzo/DUMUX/dune-common/doc/doxygen/doxygen-macros for Doxygen
-- Adding custom target for config.h generation
-- 
-- The following OPTIONAL packages have been found:

 * dune-uggrid
 * MPI , Message Passing Interface library
   Parallel programming on multiple processors
 * LATEX , Type setting system
   To generate the documentation
 * UnixCommands , Some common Unix commands
   To generate the documentation with LaTeX
 * Doxygen , Class documentation generator , <www.doxygen.org>
   To generate the class documentation from C++ sources
 * PkgConfig , Unified interface for querying installed libraries
   To find Dune module dependencies
 * BLAS , fast linear algebra routines
 * Threads , Multi-threading library
 * LAPACK , fast linear algebra routines
 * QuadMath , GCC Quad-Precision library
 * Inkscape , converts SVG images , <www.inkscape.org>
   To generate the documentation with LaTeX
 * TBB , Threading Building Blocks library
   Parallel programming on multi-core processors
 * PythonInterp
 * PythonLibs

-- The following REQUIRED packages have been found:

 * dune-common
 * dune-geometry

-- The following OPTIONAL packages have not been found:

 * Sphinx , Documentation generator , <www.sphinx-doc.org>
   To generate the documentation from CMake and Python sources
 * GMP , GNU multi-precision library including the C++ bindings GMPxx
   Multi-precision quadrature rules, basis function evaluation etc.
 * Vc , C++ Vectorization library , <https://github.com/VcDevel/Vc>
   For use of SIMD instructions
 * METIS
 * ParMETIS
 * Alberta
 * Psurface
 * AmiraMesh

-- Configuring done
-- Generating done
-- Build files have been written to: /home/lorenzo/DUMUX/dune-grid/build-cmake
--- calling make for dune-grid ---
build directory: build-cmake
cmake --build . -- 
[100%] Built target dunegrid
--- dune-grid done ---
--- calling all for dune-alugrid ---
--- calling vcsetup for dune-alugrid ---
--- calling configure for dune-alugrid ---
----- using default flags $CONFIGURE_FLAGS from 
/home/lorenzo/DUMUX/dumux/optim.opts -----
cmake   \ --enable-parallel 
"-Ddune-common_DIR=/home/lorenzo/DUMUX/dune-common/build-cmake" 
"-Ddune-geometry_DIR=/home/lorenzo/DUMUX/dune-geometry/build-cmake" 
"-Ddune-uggrid_DIR=/home/lorenzo/DUMUX/dune-uggrid/build-cmake" 
"-Ddune-grid_DIR=/home/lorenzo/DUMUX/dune-grid/build-cmake" -DCMAKE_CXX_FLAGS=" 
-Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-sign-compare 
-Wno-unused-parameter -fno-strict-aliasing -fstrict-overflow 
-fno-finite-math-only -O3 -march=native -DNDEBUG=1" 
"/home/lorenzo/DUMUX/dune-alugrid"
-- Dependencies for dune-alugrid: dune-grid (>= 2.6)
-- Suggestions for dune-alugrid: dune-python;dune-corepy
-- Dependencies for dune-grid: dune-geometry (>= 2.6)
-- Suggestions for dune-grid: dune-uggrid (>=2.6)
-- No full CMake package configuration support available. Falling back to 
pkg-config.
-- Checking for module 'dune-python '
--   No package 'dune-python' found
-- No full CMake package configuration support available. Falling back to 
pkg-config.
-- Checking for module 'dune-corepy '
--   No package 'dune-corepy' found
-- Dependencies for dune-geometry: dune-common (>= 2.6)
-- Dependencies for dune-uggrid: dune-common
-- I could not find the htlatex command.
-- I could not find the pdftops command.
-- Could NOT find Sphinx (missing:  SPHINX_EXECUTABLE) 
-- Searching for macro file 'DuneCommonMacros' for module 'dune-common'.
-- Performing tests specific to dune-common from file 
/home/lorenzo/DUMUX/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- Set Minimal Debug Level to 4
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Could NOT find GMP (missing:  GMPXX_INCLUDE_DIR GMP_LIB GMPXX_LIB 
GMP_HEADER_WORKS GMPXX_LIB_WORKS) 
-- Library dir: TBB_LIBRARY_DIR-NOTFOUND
-- defaulting TBB_CACHE_ALIGNED_ALLOCATOR_ALIGNMENT to 128
-- Setting dune-common_INCLUDE_DIRS=/home/lorenzo/DUMUX/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Searching for macro file 'DuneUggridMacros' for module 'dune-uggrid'.
-- Performing tests specific to dune-uggrid from file 
/home/lorenzo/DUMUX/dune-uggrid/cmake/modules/DuneUggridMacros.cmake.
-- Setting dune-uggrid_INCLUDE_DIRS=/home/lorenzo/DUMUX/dune-uggrid
-- Setting dune-uggrid_LIBRARIES=ugL;ugS2;ugS3
-- Searching for macro file 'DuneGeometryMacros' for module 'dune-geometry'.
-- No module specific tests perfomed for module 'dune-geometry' because macro 
file 'DuneGeometryMacros.cmake' not found in 
/home/lorenzo/DUMUX/dune-grid/cmake/modules;/home/lorenzo/DUMUX/dune-geometry/cmake/modules;/home/lorenzo/DUMUX/dune-uggrid/cmake/modules;/home/lorenzo/DUMUX/dune-common/cmake/modules;/home/lorenzo/DUMUX/dune-alugrid/cmake/modules;/home/lorenzo/DUMUX/dune-grid/cmake/modules;/home/lorenzo/DUMUX/dune-alugrid/cmake/modules.
-- Setting dune-geometry_INCLUDE_DIRS=/home/lorenzo/DUMUX/dune-geometry
-- Setting dune-geometry_LIBRARIES=dunegeometry
-- Searching for macro file 'DuneCorepyMacros' for module 'dune-corepy'.
-- No module specific tests perfomed for module 'dune-corepy' because macro 
file 'DuneCorepyMacros.cmake' not found in 
/home/lorenzo/DUMUX/dune-grid/cmake/modules;/home/lorenzo/DUMUX/dune-geometry/cmake/modules;/home/lorenzo/DUMUX/dune-uggrid/cmake/modules;/home/lorenzo/DUMUX/dune-common/cmake/modules;/home/lorenzo/DUMUX/dune-alugrid/cmake/modules;/home/lorenzo/DUMUX/dune-grid/cmake/modules;/home/lorenzo/DUMUX/dune-alugrid/cmake/modules.
-- Searching for macro file 'DunePythonMacros' for module 'dune-python'.
-- No module specific tests perfomed for module 'dune-python' because macro 
file 'DunePythonMacros.cmake' not found in 
/home/lorenzo/DUMUX/dune-grid/cmake/modules;/home/lorenzo/DUMUX/dune-geometry/cmake/modules;/home/lorenzo/DUMUX/dune-uggrid/cmake/modules;/home/lorenzo/DUMUX/dune-common/cmake/modules;/home/lorenzo/DUMUX/dune-alugrid/cmake/modules;/home/lorenzo/DUMUX/dune-grid/cmake/modules;/home/lorenzo/DUMUX/dune-alugrid/cmake/modules.
-- Searching for macro file 'DuneGridMacros' for module 'dune-grid'.
-- Performing tests specific to dune-grid from file 
/home/lorenzo/DUMUX/dune-grid/cmake/modules/DuneGridMacros.cmake.
-- Could NOT find METIS (missing:  METIS_INCLUDE_DIR METIS_LIBRARY 
HAVE_METIS_PARTGRAPHKWAY) 
-- Could NOT find ParMETIS (missing:  PARMETIS_INCLUDE_DIR PARMETIS_LIBRARY 
HAVE_PARMETIS) 
-- Checking for one of the modules 'psurface'
-- Checking for module 'psurface'
--   No package 'psurface' found
-- Could NOT find psurface (missing:  PSURFACE_INCLUDE_DIR PSURFACE_LIBRARY) 
-- Could NOT find AmiraMesh (missing:  AMIRAMESH_INCLUDE_DIR AMIRAMESH_LIBRARY) 
-- Setting dune-grid_INCLUDE_DIRS=/home/lorenzo/DUMUX/dune-grid
-- Setting dune-grid_LIBRARIES=dunegrid
-- Searching for macro file 'DuneAlugridMacros' for module 'dune-alugrid'.
-- Performing tests specific to dune-alugrid from file 
/home/lorenzo/DUMUX/dune-alugrid/cmake/modules/DuneAlugridMacros.cmake.
-- Could NOT find SIONlib (missing:  SIONLIB_INCLUDE_DIR SIONLIB_LIBRARY 
SIONLIB_HEADER_USABLE SIONLIB_LIB_WORKS SIONLIB_LIB_SIONSER_WORKS) 
-- Could NOT find DLMalloc (missing:  DLMALLOC_INCLUDE_DIR 
DLMALLOC_SOURCE_INCLUDE) 
-- Could NOT find PTScotch (missing:  PTSCOTCH_INCLUDE_DIR PTSCOTCH_LIBRARY 
SCOTCH_LIBRARY PTSCOTCHERR_LIBRARY) 
-- Could NOT find METIS (missing:  METIS_INCLUDE_DIR METIS_LIBRARY 
HAVE_METIS_PARTGRAPHKWAY) 
-- Using scripts from /home/lorenzo/DUMUX/dune-common/cmake/scripts for 
creating doxygen stuff.
-- using /home/lorenzo/DUMUX/dune-common/doc/doxygen/Doxystyle to create 
doxystyle file
-- using C macro definitions from 
/home/lorenzo/DUMUX/dune-common/doc/doxygen/doxygen-macros for Doxygen
-- Adding custom target for config.h generation
-- 
-- The following OPTIONAL packages have been found:

 * dune-uggrid
 * LATEX , Type setting system
   To generate the documentation
 * UnixCommands , Some common Unix commands
   To generate the documentation with LaTeX
 * Doxygen , Class documentation generator , <www.doxygen.org>
   To generate the class documentation from C++ sources
 * PkgConfig , Unified interface for querying installed libraries
   To find Dune module dependencies
 * BLAS , fast linear algebra routines
 * LAPACK , fast linear algebra routines
 * QuadMath , GCC Quad-Precision library
 * Inkscape , converts SVG images , <www.inkscape.org>
   To generate the documentation with LaTeX
 * TBB , Threading Building Blocks library
   Parallel programming on multi-core processors
 * PythonInterp
 * PythonLibs
 * ZLIB
 * MPI , Message Passing Interface library
   Parallel programming on multiple processors
   Parallel programming on multiple processors
 * Threads , Multi-threading library

-- The following REQUIRED packages have been found:

 * dune-common
 * dune-grid
 * dune-geometry

-- The following OPTIONAL packages have not been found:

 * dune-python
 * dune-corepy
 * Sphinx , Documentation generator , <www.sphinx-doc.org>
   To generate the documentation from CMake and Python sources
 * GMP , GNU multi-precision library including the C++ bindings GMPxx
   Multi-precision quadrature rules, basis function evaluation etc.
 * Vc , C++ Vectorization library , <https://github.com/VcDevel/Vc>
   For use of SIMD instructions
 * ParMETIS
 * Alberta
 * Psurface
 * AmiraMesh
 * SIONlib
 * DLMalloc
 * PTScotch
 * ZOLTAN
 * METIS

-- Configuring done
-- Generating done
-- Build files have been written to: 
/home/lorenzo/DUMUX/dune-alugrid/build-cmake
--- calling make for dune-alugrid ---
build directory: build-cmake
cmake --build . -- 
[100%] Built target dunealugrid
--- dune-alugrid done ---
--- calling all for dumux ---
--- calling vcsetup for dumux ---
--- calling configure for dumux ---
----- using default flags $CONFIGURE_FLAGS from 
/home/lorenzo/DUMUX/dumux/optim.opts -----
cmake   \ --enable-parallel 
"-Ddune-common_DIR=/home/lorenzo/DUMUX/dune-common/build-cmake" 
"-Ddune-geometry_DIR=/home/lorenzo/DUMUX/dune-geometry/build-cmake" 
"-Ddune-uggrid_DIR=/home/lorenzo/DUMUX/dune-uggrid/build-cmake" 
"-Ddune-grid_DIR=/home/lorenzo/DUMUX/dune-grid/build-cmake" 
"-Ddune-localfunctions_DIR=/home/lorenzo/DUMUX/dune-localfunctions/build-cmake" 
"-Ddune-istl_DIR=/home/lorenzo/DUMUX/dune-istl/build-cmake" 
"-Ddune-alugrid_DIR=/home/lorenzo/DUMUX/dune-alugrid/build-cmake" 
-DCMAKE_CXX_FLAGS=" -Wall -Wunused -Wmissing-include-dirs -Wcast-align 
-Wno-sign-compare -Wno-unused-parameter -fno-strict-aliasing -fstrict-overflow 
-fno-finite-math-only -O3 -march=native -DNDEBUG=1" "/home/lorenzo/DUMUX/dumux"
-- Dependencies for dumux: dune-common (>= 2.4.1);dune-grid (>= 
2.4);dune-localfunctions (>= 2.4);dune-istl (>= 2.4)
-- Suggestions for dumux: dune-alugrid (>=2.4);dune-pdelab 
(>=2.0);dune-multidomain;dune-foamgrid (>=2.4);opm-grid
-- Dependencies for dune-grid: dune-geometry (>= 2.6)
-- Suggestions for dune-grid: dune-uggrid (>=2.6)
-- Dependencies for dune-localfunctions: dune-geometry (>= 2.6)
-- Dependencies for dune-istl: dune-common (>= 2.6)
-- Dependencies for dune-alugrid: dune-grid (>= 2.6)
-- Suggestions for dune-alugrid: dune-python;dune-corepy
-- No full CMake package configuration support available. Falling back to 
pkg-config.
-- Checking for module 'dune-pdelab>=2.0'
--   
-- No full CMake package configuration support available. Falling back to 
pkg-config.
-- Checking for module 'dune-multidomain '
--   No package 'dune-multidomain' found
-- No full CMake package configuration support available. Falling back to 
pkg-config.
-- Checking for module 'dune-foamgrid>=2.4'
--   
-- No full CMake package configuration support available. Falling back to 
pkg-config.
-- Checking for module 'opm-grid '
--   No package 'opm-grid' found
-- Dependencies for dune-geometry: dune-common (>= 2.6)
-- No full CMake package configuration support available. Falling back to 
pkg-config.
-- Checking for module 'dune-python '
--   No package 'dune-python' found
-- No full CMake package configuration support available. Falling back to 
pkg-config.
-- Checking for module 'dune-corepy '
--   No package 'dune-corepy' found
-- Dependencies for dune-grid: dune-geometry (>= 2.6)
-- Suggestions for dune-grid: dune-uggrid (>=2.6)
-- Dependencies for dune-uggrid: dune-common
-- Dependencies for dune-uggrid: dune-common
-- Dependencies for dune-geometry: dune-common (>= 2.6)
-- I could not find the htlatex command.
-- I could not find the pdftops command.
-- Could NOT find Sphinx (missing:  SPHINX_EXECUTABLE) 
-- Searching for macro file 'DuneCommonMacros' for module 'dune-common'.
-- Performing tests specific to dune-common from file 
/home/lorenzo/DUMUX/dune-common/cmake/modules/DuneCommonMacros.cmake.
-- Set Minimal Debug Level to 4
-- A library with BLAS API found.
-- A library with LAPACK API found.
-- Could NOT find GMP (missing:  GMPXX_INCLUDE_DIR GMP_LIB GMPXX_LIB 
GMP_HEADER_WORKS GMPXX_LIB_WORKS) 
-- Library dir: TBB_LIBRARY_DIR-NOTFOUND
-- defaulting TBB_CACHE_ALIGNED_ALLOCATOR_ALIGNMENT to 128
-- Setting dune-common_INCLUDE_DIRS=/home/lorenzo/DUMUX/dune-common
-- Setting dune-common_LIBRARIES=dunecommon
-- Searching for macro file 'DuneGeometryMacros' for module 'dune-geometry'.
-- No module specific tests perfomed for module 'dune-geometry' because macro 
file 'DuneGeometryMacros.cmake' not found in 
/home/lorenzo/DUMUX/dumux/cmake/modules;/home/lorenzo/DUMUX/dune-localfunctions/cmake/modules;/home/lorenzo/DUMUX/dune-istl/cmake/modules;/home/lorenzo/DUMUX/dune-alugrid/cmake/modules;/home/lorenzo/DUMUX/dune-grid/cmake/modules;/home/lorenzo/DUMUX/dune-uggrid/cmake/modules;/home/lorenzo/DUMUX/dune-geometry/cmake/modules;/home/lorenzo/DUMUX/dune-common/cmake/modules.
-- Setting dune-geometry_INCLUDE_DIRS=/home/lorenzo/DUMUX/dune-geometry
-- Setting dune-geometry_LIBRARIES=dunegeometry
-- Searching for macro file 'DuneUggridMacros' for module 'dune-uggrid'.
-- Performing tests specific to dune-uggrid from file 
/home/lorenzo/DUMUX/dune-uggrid/cmake/modules/DuneUggridMacros.cmake.
-- Setting dune-uggrid_INCLUDE_DIRS=/home/lorenzo/DUMUX/dune-uggrid
-- Setting dune-uggrid_LIBRARIES=ugL;ugS2;ugS3
-- Searching for macro file 'DuneGridMacros' for module 'dune-grid'.
-- Performing tests specific to dune-grid from file 
/home/lorenzo/DUMUX/dune-grid/cmake/modules/DuneGridMacros.cmake.
-- Could NOT find METIS (missing:  METIS_INCLUDE_DIR METIS_LIBRARY 
HAVE_METIS_PARTGRAPHKWAY) 
-- Could NOT find ParMETIS (missing:  PARMETIS_INCLUDE_DIR PARMETIS_LIBRARY 
HAVE_PARMETIS) 
-- Checking for one of the modules 'psurface'
-- Checking for module 'psurface'
--   No package 'psurface' found
-- Could NOT find psurface (missing:  PSURFACE_INCLUDE_DIR PSURFACE_LIBRARY) 
-- Could NOT find AmiraMesh (missing:  AMIRAMESH_INCLUDE_DIR AMIRAMESH_LIBRARY) 
-- Setting dune-grid_INCLUDE_DIRS=/home/lorenzo/DUMUX/dune-grid
-- Setting dune-grid_LIBRARIES=dunegrid
-- Searching for macro file 'DuneCorepyMacros' for module 'dune-corepy'.
-- No module specific tests perfomed for module 'dune-corepy' because macro 
file 'DuneCorepyMacros.cmake' not found in 
/home/lorenzo/DUMUX/dumux/cmake/modules;/home/lorenzo/DUMUX/dune-localfunctions/cmake/modules;/home/lorenzo/DUMUX/dune-istl/cmake/modules;/home/lorenzo/DUMUX/dune-alugrid/cmake/modules;/home/lorenzo/DUMUX/dune-grid/cmake/modules;/home/lorenzo/DUMUX/dune-uggrid/cmake/modules;/home/lorenzo/DUMUX/dune-geometry/cmake/modules;/home/lorenzo/DUMUX/dune-common/cmake/modules.
-- Searching for macro file 'DunePythonMacros' for module 'dune-python'.
-- No module specific tests perfomed for module 'dune-python' because macro 
file 'DunePythonMacros.cmake' not found in 
/home/lorenzo/DUMUX/dumux/cmake/modules;/home/lorenzo/DUMUX/dune-localfunctions/cmake/modules;/home/lorenzo/DUMUX/dune-istl/cmake/modules;/home/lorenzo/DUMUX/dune-alugrid/cmake/modules;/home/lorenzo/DUMUX/dune-grid/cmake/modules;/home/lorenzo/DUMUX/dune-uggrid/cmake/modules;/home/lorenzo/DUMUX/dune-geometry/cmake/modules;/home/lorenzo/DUMUX/dune-common/cmake/modules.
-- Searching for macro file 'OpmGridMacros' for module 'opm-grid'.
-- No module specific tests perfomed for module 'opm-grid' because macro file 
'OpmGridMacros.cmake' not found in 
/home/lorenzo/DUMUX/dumux/cmake/modules;/home/lorenzo/DUMUX/dune-localfunctions/cmake/modules;/home/lorenzo/DUMUX/dune-istl/cmake/modules;/home/lorenzo/DUMUX/dune-alugrid/cmake/modules;/home/lorenzo/DUMUX/dune-grid/cmake/modules;/home/lorenzo/DUMUX/dune-uggrid/cmake/modules;/home/lorenzo/DUMUX/dune-geometry/cmake/modules;/home/lorenzo/DUMUX/dune-common/cmake/modules.
-- Searching for macro file 'DuneFoamgridMacros' for module 'dune-foamgrid'.
-- No module specific tests perfomed for module 'dune-foamgrid' because macro 
file 'DuneFoamgridMacros.cmake' not found in 
/home/lorenzo/DUMUX/dumux/cmake/modules;/home/lorenzo/DUMUX/dune-localfunctions/cmake/modules;/home/lorenzo/DUMUX/dune-istl/cmake/modules;/home/lorenzo/DUMUX/dune-alugrid/cmake/modules;/home/lorenzo/DUMUX/dune-grid/cmake/modules;/home/lorenzo/DUMUX/dune-uggrid/cmake/modules;/home/lorenzo/DUMUX/dune-geometry/cmake/modules;/home/lorenzo/DUMUX/dune-common/cmake/modules.
-- Searching for macro file 'DuneMultidomainMacros' for module 
'dune-multidomain'.
-- No module specific tests perfomed for module 'dune-multidomain' because 
macro file 'DuneMultidomainMacros.cmake' not found in 
/home/lorenzo/DUMUX/dumux/cmake/modules;/home/lorenzo/DUMUX/dune-localfunctions/cmake/modules;/home/lorenzo/DUMUX/dune-istl/cmake/modules;/home/lorenzo/DUMUX/dune-alugrid/cmake/modules;/home/lorenzo/DUMUX/dune-grid/cmake/modules;/home/lorenzo/DUMUX/dune-uggrid/cmake/modules;/home/lorenzo/DUMUX/dune-geometry/cmake/modules;/home/lorenzo/DUMUX/dune-common/cmake/modules.
-- Searching for macro file 'DunePdelabMacros' for module 'dune-pdelab'.
-- No module specific tests perfomed for module 'dune-pdelab' because macro 
file 'DunePdelabMacros.cmake' not found in 
/home/lorenzo/DUMUX/dumux/cmake/modules;/home/lorenzo/DUMUX/dune-localfunctions/cmake/modules;/home/lorenzo/DUMUX/dune-istl/cmake/modules;/home/lorenzo/DUMUX/dune-alugrid/cmake/modules;/home/lorenzo/DUMUX/dune-grid/cmake/modules;/home/lorenzo/DUMUX/dune-uggrid/cmake/modules;/home/lorenzo/DUMUX/dune-geometry/cmake/modules;/home/lorenzo/DUMUX/dune-common/cmake/modules.
-- Searching for macro file 'DuneAlugridMacros' for module 'dune-alugrid'.
-- Performing tests specific to dune-alugrid from file 
/home/lorenzo/DUMUX/dune-alugrid/cmake/modules/DuneAlugridMacros.cmake.
-- Could NOT find SIONlib (missing:  SIONLIB_INCLUDE_DIR SIONLIB_LIBRARY 
SIONLIB_HEADER_USABLE SIONLIB_LIB_WORKS SIONLIB_LIB_SIONSER_WORKS) 
-- Could NOT find DLMalloc (missing:  DLMALLOC_INCLUDE_DIR 
DLMALLOC_SOURCE_INCLUDE) 
-- Could NOT find PTScotch (missing:  PTSCOTCH_INCLUDE_DIR PTSCOTCH_LIBRARY 
SCOTCH_LIBRARY PTSCOTCHERR_LIBRARY) 
-- Could NOT find METIS (missing:  METIS_INCLUDE_DIR METIS_LIBRARY 
HAVE_METIS_PARTGRAPHKWAY) 
-- Setting dune-alugrid_INCLUDE_DIRS=/home/lorenzo/DUMUX/dune-alugrid
-- Setting dune-alugrid_LIBRARIES=dunealugrid
-- Searching for macro file 'DuneIstlMacros' for module 'dune-istl'.
-- Performing tests specific to dune-istl from file 
/home/lorenzo/DUMUX/dune-istl/cmake/modules/DuneIstlMacros.cmake.
-- Could NOT find METIS (missing:  METIS_INCLUDE_DIR METIS_LIBRARY 
HAVE_METIS_PARTGRAPHKWAY) 
-- Could NOT find ParMETIS (missing:  PARMETIS_INCLUDE_DIR PARMETIS_LIBRARY 
HAVE_PARMETIS) 
-- Could NOT find SuperLU (missing:  SUPERLU_INCLUDE_DIR SUPERLU_LIBRARY 
SUPERLU_MIN_VERSION_4) 
-- Could NOT find ARPACK (missing:  ARPACK_LIBRARY) 
-- Could NOT find ARPACKPP (missing:  ARPACK_FOUND ARPACKPP_INCLUDE_DIR) 
-- Setting dune-istl_INCLUDE_DIRS=/home/lorenzo/DUMUX/dune-istl
-- Searching for macro file 'DuneLocalfunctionsMacros' for module 
'dune-localfunctions'.
-- No module specific tests perfomed for module 'dune-localfunctions' because 
macro file 'DuneLocalfunctionsMacros.cmake' not found in 
/home/lorenzo/DUMUX/dumux/cmake/modules;/home/lorenzo/DUMUX/dune-localfunctions/cmake/modules;/home/lorenzo/DUMUX/dune-istl/cmake/modules;/home/lorenzo/DUMUX/dune-alugrid/cmake/modules;/home/lorenzo/DUMUX/dune-grid/cmake/modules;/home/lorenzo/DUMUX/dune-uggrid/cmake/modules;/home/lorenzo/DUMUX/dune-geometry/cmake/modules;/home/lorenzo/DUMUX/dune-common/cmake/modules.
-- Setting 
dune-localfunctions_INCLUDE_DIRS=/home/lorenzo/DUMUX/dune-localfunctions
-- Searching for macro file 'DumuxMacros' for module 'dumux'.
-- Performing tests specific to dumux from file 
/home/lorenzo/DUMUX/dumux/cmake/modules/DumuxMacros.cmake.
-- Could NOT find GLPK (missing:  GLPK_INCLUDE_DIR GLPK_LIBRARY) 
-- Could NOT find Gstat (missing:  GSTAT_EXECUTABLE) 
-- Could NOT find NLOPT (missing:  NLOPT_INCLUDE_DIR NLOPT_LIBRARY) 
-- Could NOT find PTScotch (missing:  PTSCOTCH_INCLUDE_DIR PTSCOTCH_LIBRARY 
SCOTCH_LIBRARY PTSCOTCHERR_LIBRARY) 
-- Could NOT find PVPython (missing:  PVPYTHON_EXECUTABLE) 
-- Using scripts from /home/lorenzo/DUMUX/dune-common/cmake/scripts for 
creating doxygen stuff.
-- using /home/lorenzo/DUMUX/dune-common/doc/doxygen/Doxystyle to create 
doxystyle file
-- using C macro definitions from 
/home/lorenzo/DUMUX/dune-common/doc/doxygen/doxygen-macros for Doxygen
-- Adding custom target for config.h generation
-- 
-- The following OPTIONAL packages have been found:

 * dune-alugrid
 * dune-uggrid
 * LATEX , Type setting system
   To generate the documentation
 * UnixCommands , Some common Unix commands
   To generate the documentation with LaTeX
 * Doxygen , Class documentation generator , <www.doxygen.org>
   To generate the class documentation from C++ sources
 * PkgConfig , Unified interface for querying installed libraries
   To find Dune module dependencies
 * LAPACK , fast linear algebra routines
 * QuadMath , GCC Quad-Precision library
 * Inkscape , converts SVG images , <www.inkscape.org>
   To generate the documentation with LaTeX
 * TBB , Threading Building Blocks library
   Parallel programming on multi-core processors
 * PythonInterp
 * PythonLibs
 * ZLIB
 * SuiteSparse
 * Gnuplot
 * MPI , Message Passing Interface library
   Parallel programming on multiple processors
   Parallel programming on multiple processors
   Parallel programming on multiple processors
 * Threads , Multi-threading library
 * Valgrind

-- The following REQUIRED packages have been found:

 * dune-common
 * dune-grid
 * dune-localfunctions
 * dune-istl
 * dune-geometry

-- The following OPTIONAL packages have not been found:

 * dune-pdelab
 * dune-multidomain
 * dune-foamgrid
 * opm-grid
 * dune-python
 * dune-corepy
 * Sphinx , Documentation generator , <www.sphinx-doc.org>
   To generate the documentation from CMake and Python sources
 * GMP , GNU multi-precision library including the C++ bindings GMPxx
   Multi-precision quadrature rules, basis function evaluation etc.
 * Vc , C++ Vectorization library , <https://github.com/VcDevel/Vc>
   For use of SIMD instructions
 * Alberta
 * Psurface
 * AmiraMesh
 * SIONlib
 * DLMalloc
 * ZOLTAN
 * METIS
 * ParMETIS
 * SuperLU , Supernodal LU
   Direct solver for linear system, based on LU decomposition
 * ARPACK , ARnoldi PACKage
   Solve large scale eigenvalue problems
 * ARPACKPP , ARPACK++
   C++ interface for ARPACK
 * GLPK
 * Gstat
 * NLOPT
 * PTScotch
 * PVPython

-- Configuring done
-- Generating done
-- Build files have been written to: /home/lorenzo/DUMUX/dumux/build-cmake
--- calling make for dumux ---
build directory: build-cmake
cmake --build . -- 
--- dumux done ---
--- done ---

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Re: [DuMuX] set_singular_limit and parallel execution

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