Kenneth,
Thanks for response, below is output from config.log [1] under build root's
"utest/CUnit-2.1-2". Comparing with config.log from a successful build when
run interactively [2] it seems that the line "./libopenblasp-r0.2.10.a >&5"
should not be there.
[1] Failing under Easybuild
gcc version 4.8.3 (GCC)
configure:3379: $? = 0
configure:3368: gcc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:3379: $? = 1
configure:3368: gcc -qversion >&5
gcc: error: unrecognized command line option '-qversion'
gcc: fatal error: no input files
compilation terminated.
configure:3379: $? = 1
configure:3399: checking whether the C compiler works
configure:3421: gcc -O2 -march=native -O2 -DUTEST_CHECK -DSANITY_CHECK
-DREFNAME=f_ -Wall -m64 -DF_INTERFACE_GFORT -fPIC -DDYNAMIC_ARCH -DNO_AVX2
-DSMP_SERVER -DNO_WARMUP -DMAX_CPU_NUMBER=64 -DASMNAME= -DASMFNAME=_ -DNAME=_
-DCNAME= -DCHAR_NAME="_" -DCHAR_CN
AME="" -DNO_AFFINITY -I.
-I/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2/include
-O2 -DUTEST_CHECK -DSANITY_CHECK -DREFNAME=libcunitf_ -Wall -m64
-DF_INTERFACE_GFORT -fPIC -DDYNAMIC_ARCH -DNO_AVX2 -DSMP_SERVER -DNO_WARMUP
-DMAX_CPU_NUMBER=64 -DASMNAME=libcunit -DASMFNAME=libcunit_ -DNAME=libcunit_
-DCNAME=libcunit -DCHAR_NAME="libcunit_" -DCHAR_CNAME="libcunit" -DNO_AFFINITY
-I.. -DRELEASE=@RELEASE@ -Wall -W -pedantic -Wshadow -ansi
-I/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK
-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2/CUnit/Headers
-L/apps/easybuild/software/Core/GCC/4.8.3/lib64
-L/apps/easybuild/software/Core/GCC/4.8.3/lib
-L/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2/CUnit/Sources
conftest.c
../libopenblasp-r0.2.10.a >&5
gcc: error: ../libopenblasp-r0.2.10.a: No such file or directory
configure:3425: $? = 1
configure:3463: result: no
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "CUnit"
| #define PACKAGE_TARNAME "cunit"
| #define PACKAGE_VERSION "2.1-2"
| #define PACKAGE_STRING "CUnit 2.1-2"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define PACKAGE "CUnit"
| #define VERSION "2.1-2"
| /* end confdefs.h. */
|
| int
| main ()
| {
|
| ;
| return 0;
| }
configure:3468: error: in
`/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2':
configure:3470: error: C compiler cannot create executables
See `config.log' for more details
[2] Succeeds when run manually:
gcc version 4.8.3 (GCC)
configure:3379: $? = 0
configure:3368: gcc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:3379: $? = 1
configure:3368: gcc -qversion >&5
gcc: error: unrecognized command line option '-qversion'
gcc: fatal error: no input files
compilation terminated.
configure:3379: $? = 1
configure:3399: checking whether the C compiler works
configure:3421: gcc
-I/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2/include
-O2 -DUTEST_CHECK -DSANITY_CHECK -DREFNAME=libcunitf_ -Wall -m64
-DF_INTERFACE_GFORT -fPIC -DDYNAMIC_ARCH -DNO_AVX2 -DSMP_SERVER -DNO_WARMUP
-DMAX_CPU_NUMBER=64 -DASMNAME=libcunit -DASMFNAME=libcunit_ -DNAME=libcunit_
-DCNAME=libcunit -DCHAR_NAME="libcunit_" -DCHAR_CNAME="libcunit" -DNO_AFFINITY
-I.. -DRELEASE=@RELEASE@ -Wall -W -pedantic -Wshadow -ansi
-I/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2/CUnit/Headers
-L/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2/CUnit/Sources
conftest.c >&5
configure:3425: $? = 0
configure:3473: result: yes
=============================
Trey Dockendorf
Systems Analyst I
Texas A&M University
Academy for Advanced Telecommunications and Learning Technologies
Phone: (979)458-2396
Email: [email protected]
Jabber: [email protected]
----- Original Message -----
> From: "Kenneth Hoste" <[email protected]>
> To: [email protected]
> Sent: Wednesday, August 27, 2014 2:31:25 PM
> Subject: Re: [easybuild] OpenBLAS with buildopts UTEST_CHECK=1
>
> Hi Trey,
>
> On 27/08/14 21:25, Trey Dockendorf wrote:
> > I'm having an issue replicating in Easybuild what I can do
> > interactively when building OpenBLAS.
> >
> > Manually running 'make BINARY=64 DYNAMIC_ARCH=1 USE_THREAD=1
> > NUM_THREADS=64 NO_AFFINITY=1 NO_AVX2=1 UTEST_CHECK=1' on the
> > source gives me no issue.
> >
> > Using as a base the Easyconfig for
> > OpenBLAS-0.2.9-GCC-4.8.3-LAPACK-3.5.0 [1] where I only changed the
> > following:
> >
> > version = '0.2.10'
> > maxparallel = 1 # OpenBLAS will parallel build by default AFAIK
> > buildopts = 'BINARY=64 DYNAMIC_ARCH=1 USE_THREAD=1 NUM_THREADS=64
> > NO_AFFINITY=1 NO_AVX2=1 UTEST_CHECK=1'
> >
> > $ eb OpenBLAS-0.2.10-GCC-4.8.3-LAPACK-3.5.0.eb --robot=.
> >
> > # From the log file when it fails
> >
> > <snip>
> > checking for gcc... gcc
> > checking whether the C compiler works... no
> > configure: error: in
> > `/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2':
> > configure: error: C compiler cannot create executables
> > See `config.log' for more details
>
> Did you check this config.log file? The real reason will be in there
> somewhere (not at the very bottom though).
>
> Look for the string "checking whether the C compiler works".
>
>
> regards,
>
> Kenneth
>
> > make[1]: ***
> > [/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2/lib/libcunit.a]
> > Error 77
> > make[1]: Leaving directory
> > `/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest'
> > make: *** [tests] Error 2
> >
> > == 2014-08-27 14:09:57,601 main.easyblock.<module> WARNING build
> > failed (first 300 chars): EasyBuild crashed with an error (at
> > easybuild/tools/run.py:382 in parse_cmd_output): cmd " make -j 1
> > BINARY=64 DYNAMIC_ARCH=1 USE_THREAD=1 NUM_THREADS=64 NO_AFFINITY=1
> > NO_AVX2=1 UTEST_CHECK=1" exited with exitcode 2 and output:
> >
> > Thanks,
> > - Trey
> >
> > [1] :
> > https://github.com/hpcugent/easybuild-easyconfigs/blob/master/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.9-GCC-4.8.3-LAPACK-3.5.0.eb
> >
> > =============================
> >
> > Trey Dockendorf
> > Systems Analyst I
> > Texas A&M University
> > Academy for Advanced Telecommunications and Learning Technologies
> > Phone: (979)458-2396
> > Email: [email protected]
> > Jabber: [email protected]
>
>
