On 27/08/14 21:45, Trey Dockendorf wrote:
Kenneth,
Thanks for response, below is output from config.log [1] under build root's "utest/CUnit-2.1-2".
Comparing with config.log from a successful build when run interactively [2] it seems that the line
"./libopenblasp-r0.2.10.a >&5" should not be there.
Hmm, weird, I have absolutely no clue where that is coming from.
Can you collect a full debug log with EasyBuild (use --debug), and send
it to us?
Please include your easyconfig file as well.
Are you running into similar issues with OpenBLAS 0.2.9 with the same
build options?
I'm not aware of anyone having tried OpenBLAS 0.2.10 yet with EB, but I
know 0.2.9 does work (although without the UTEST_CHECK enabled).
regards,
Kenneth
[1] Failing under Easybuild
gcc version 4.8.3 (GCC)
configure:3379: $? = 0
configure:3368: gcc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:3379: $? = 1
configure:3368: gcc -qversion >&5
gcc: error: unrecognized command line option '-qversion'
gcc: fatal error: no input files
compilation terminated.
configure:3379: $? = 1
configure:3399: checking whether the C compiler works
configure:3421: gcc -O2 -march=native -O2 -DUTEST_CHECK -DSANITY_CHECK -DREFNAME=f_ -Wall
-m64 -DF_INTERFACE_GFORT -fPIC -DDYNAMIC_ARCH -DNO_AVX2 -DSMP_SERVER -DNO_WARMUP
-DMAX_CPU_NUMBER=64 -DASMNAME= -DASMFNAME=_ -DNAME=_ -DCNAME= -DCHAR_NAME="_"
-DCHAR_CN
AME="" -DNO_AFFINITY -I.
-I/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2/include
-O2 -DUTEST_CHECK -DSANITY_CHECK -DREFNAME=libcunitf_ -Wall -m64 -DF_INTERFACE_GFORT
-fPIC -DDYNAMIC_ARCH -DNO_AVX2 -DSMP_SERVER -DNO_WARMUP
-DMAX_CPU_NUMBER=64 -DASMNAME=libcunit -DASMFNAME=libcunit_ -DNAME=libcunit_ -DCNAME=libcunit
-DCHAR_NAME="libcunit_" -DCHAR_CNAME="libcunit" -DNO_AFFINITY -I..
-DRELEASE=@RELEASE@ -Wall -W -pedantic -Wshadow -ansi -I/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK
-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2/CUnit/Headers
-L/apps/easybuild/software/Core/GCC/4.8.3/lib64
-L/apps/easybuild/software/Core/GCC/4.8.3/lib
-L/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2/CUnit/Sources
conftest.c
../libopenblasp-r0.2.10.a >&5
gcc: error: ../libopenblasp-r0.2.10.a: No such file or directory
configure:3425: $? = 1
configure:3463: result: no
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "CUnit"
| #define PACKAGE_TARNAME "cunit"
| #define PACKAGE_VERSION "2.1-2"
| #define PACKAGE_STRING "CUnit 2.1-2"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define PACKAGE "CUnit"
| #define VERSION "2.1-2"
| /* end confdefs.h. */
|
| int
| main ()
| {
|
| ;
| return 0;
| }
configure:3468: error: in
`/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2':
configure:3470: error: C compiler cannot create executables
See `config.log' for more details
[2] Succeeds when run manually:
gcc version 4.8.3 (GCC)
configure:3379: $? = 0
configure:3368: gcc -V >&5
gcc: error: unrecognized command line option '-V'
gcc: fatal error: no input files
compilation terminated.
configure:3379: $? = 1
configure:3368: gcc -qversion >&5
gcc: error: unrecognized command line option '-qversion'
gcc: fatal error: no input files
compilation terminated.
configure:3379: $? = 1
configure:3399: checking whether the C compiler works
configure:3421: gcc
-I/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2/include -O2
-DUTEST_CHECK -DSANITY_CHECK -DREFNAME=libcunitf_ -Wall -m64 -DF_INTERFACE_GFORT -fPIC -DDYNAMIC_ARCH
-DNO_AVX2 -DSMP_SERVER -DNO_WARMUP -DMAX_CPU_NUMBER=64 -DASMNAME=libcunit -DASMFNAME=libcunit_
-DNAME=libcunit_ -DCNAME=libcunit -DCHAR_NAME="libcunit_" -DCHAR_CNAME="libcunit"
-DNO_AFFINITY -I.. -DRELEASE=@RELEASE@ -Wall -W -pedantic -Wshadow -ansi
-I/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2/CUnit/Headers
-L/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2/CUnit/Sources
conftest.c >&5
configure:3425: $? = 0
configure:3473: result: yes
=============================
Trey Dockendorf
Systems Analyst I
Texas A&M University
Academy for Advanced Telecommunications and Learning Technologies
Phone: (979)458-2396
Email: [email protected]
Jabber: [email protected]
----- Original Message -----
From: "Kenneth Hoste" <[email protected]>
To: [email protected]
Sent: Wednesday, August 27, 2014 2:31:25 PM
Subject: Re: [easybuild] OpenBLAS with buildopts UTEST_CHECK=1
Hi Trey,
On 27/08/14 21:25, Trey Dockendorf wrote:
I'm having an issue replicating in Easybuild what I can do
interactively when building OpenBLAS.
Manually running 'make BINARY=64 DYNAMIC_ARCH=1 USE_THREAD=1
NUM_THREADS=64 NO_AFFINITY=1 NO_AVX2=1 UTEST_CHECK=1' on the
source gives me no issue.
Using as a base the Easyconfig for
OpenBLAS-0.2.9-GCC-4.8.3-LAPACK-3.5.0 [1] where I only changed the
following:
version = '0.2.10'
maxparallel = 1 # OpenBLAS will parallel build by default AFAIK
buildopts = 'BINARY=64 DYNAMIC_ARCH=1 USE_THREAD=1 NUM_THREADS=64
NO_AFFINITY=1 NO_AVX2=1 UTEST_CHECK=1'
$ eb OpenBLAS-0.2.10-GCC-4.8.3-LAPACK-3.5.0.eb --robot=.
# From the log file when it fails
<snip>
checking for gcc... gcc
checking whether the C compiler works... no
configure: error: in
`/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2':
configure: error: C compiler cannot create executables
See `config.log' for more details
Did you check this config.log file? The real reason will be in there
somewhere (not at the very bottom though).
Look for the string "checking whether the C compiler works".
regards,
Kenneth
make[1]: ***
[/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2/lib/libcunit.a]
Error 77
make[1]: Leaving directory
`/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest'
make: *** [tests] Error 2
== 2014-08-27 14:09:57,601 main.easyblock.<module> WARNING build
failed (first 300 chars): EasyBuild crashed with an error (at
easybuild/tools/run.py:382 in parse_cmd_output): cmd " make -j 1
BINARY=64 DYNAMIC_ARCH=1 USE_THREAD=1 NUM_THREADS=64 NO_AFFINITY=1
NO_AVX2=1 UTEST_CHECK=1" exited with exitcode 2 and output:
Thanks,
- Trey
[1] :
https://github.com/hpcugent/easybuild-easyconfigs/blob/master/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.9-GCC-4.8.3-LAPACK-3.5.0.eb
=============================
Trey Dockendorf
Systems Analyst I
Texas A&M University
Academy for Advanced Telecommunications and Learning Technologies
Phone: (979)458-2396
Email: [email protected]
Jabber: [email protected]
