The debug log was too big to send (15.6MB), resending compressed. - Trey
============================= Trey Dockendorf Systems Analyst I Texas A&M University Academy for Advanced Telecommunications and Learning Technologies Phone: (979)458-2396 Email: [email protected] Jabber: [email protected] ----- Original Message ----- > From: "Trey Dockendorf" <[email protected]> > To: [email protected] > Sent: Wednesday, August 27, 2014 4:21:22 PM > Subject: Re: [easybuild] OpenBLAS with buildopts UTEST_CHECK=1 > > I can't build 0.2.9, as I need the NO_AVX2 flag added in 0.2.10. I > get the same failure with 0.2.8 which I've also successfully built > outside EB. > > Attached is the log from running 'eb > OpenBLAS-0.2.10-GCC-4.8.3-LAPACK-3.5.0.eb --robot=. --force --debug' > as well as the easyconfig. > > Builds just fine without UTEST_CHECK=1, but be nice to be able to use > the build-in OpenBLAS tests during build. > > Thanks, > - Trey > > ============================= > > Trey Dockendorf > Systems Analyst I > Texas A&M University > Academy for Advanced Telecommunications and Learning Technologies > Phone: (979)458-2396 > Email: [email protected] > Jabber: [email protected] > > ----- Original Message ----- > > From: "Kenneth Hoste" <[email protected]> > > To: [email protected] > > Sent: Wednesday, August 27, 2014 2:53:15 PM > > Subject: Re: [easybuild] OpenBLAS with buildopts UTEST_CHECK=1 > > > > > > On 27/08/14 21:45, Trey Dockendorf wrote: > > > Kenneth, > > > > > > Thanks for response, below is output from config.log [1] under > > > build root's "utest/CUnit-2.1-2". Comparing with config.log from > > > a successful build when run interactively [2] it seems that the > > > line "./libopenblasp-r0.2.10.a >&5" should not be there. > > Hmm, weird, I have absolutely no clue where that is coming from. > > > > Can you collect a full debug log with EasyBuild (use --debug), and > > send > > it to us? > > > > Please include your easyconfig file as well. > > > > Are you running into similar issues with OpenBLAS 0.2.9 with the > > same > > build options? > > I'm not aware of anyone having tried OpenBLAS 0.2.10 yet with EB, > > but > > I > > know 0.2.9 does work (although without the UTEST_CHECK enabled). > > > > > > regards, > > > > Kenneth > > > > > > > > [1] Failing under Easybuild > > > > > > gcc version 4.8.3 (GCC) > > > configure:3379: $? = 0 > > > configure:3368: gcc -V >&5 > > > gcc: error: unrecognized command line option '-V' > > > gcc: fatal error: no input files > > > compilation terminated. > > > configure:3379: $? = 1 > > > configure:3368: gcc -qversion >&5 > > > gcc: error: unrecognized command line option '-qversion' > > > gcc: fatal error: no input files > > > compilation terminated. > > > configure:3379: $? = 1 > > > configure:3399: checking whether the C compiler works > > > configure:3421: gcc -O2 -march=native -O2 -DUTEST_CHECK > > > -DSANITY_CHECK -DREFNAME=f_ -Wall -m64 -DF_INTERFACE_GFORT -fPIC > > > -DDYNAMIC_ARCH -DNO_AVX2 -DSMP_SERVER -DNO_WARMUP > > > -DMAX_CPU_NUMBER=64 -DASMNAME= -DASMFNAME=_ -DNAME=_ -DCNAME= > > > -DCHAR_NAME="_" -DCHAR_CN > > > AME="" -DNO_AFFINITY -I. > > > -I/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2/include > > > -O2 -DUTEST_CHECK -DSANITY_CHECK -DREFNAME=libcunitf_ -Wall -m64 > > > -DF_INTERFACE_GFORT -fPIC -DDYNAMIC_ARCH -DNO_AVX2 -DSMP_SERVER > > > -DNO_WARMUP > > > -DMAX_CPU_NUMBER=64 -DASMNAME=libcunit -DASMFNAME=libcunit_ > > > -DNAME=libcunit_ -DCNAME=libcunit -DCHAR_NAME="libcunit_" > > > -DCHAR_CNAME="libcunit" -DNO_AFFINITY -I.. -DRELEASE=@RELEASE@ > > > -Wall -W -pedantic -Wshadow -ansi > > > -I/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK > > > -3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2/CUnit/Headers > > > -L/apps/easybuild/software/Core/GCC/4.8.3/lib64 > > > -L/apps/easybuild/software/Core/GCC/4.8.3/lib > > > -L/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2/CUnit/Sources > > > conftest.c > > > ../libopenblasp-r0.2.10.a >&5 > > > gcc: error: ../libopenblasp-r0.2.10.a: No such file or directory > > > configure:3425: $? = 1 > > > configure:3463: result: no > > > configure: failed program was: > > > | /* confdefs.h */ > > > | #define PACKAGE_NAME "CUnit" > > > | #define PACKAGE_TARNAME "cunit" > > > | #define PACKAGE_VERSION "2.1-2" > > > | #define PACKAGE_STRING "CUnit 2.1-2" > > > | #define PACKAGE_BUGREPORT "" > > > | #define PACKAGE_URL "" > > > | #define PACKAGE "CUnit" > > > | #define VERSION "2.1-2" > > > | /* end confdefs.h. */ > > > | > > > | int > > > | main () > > > | { > > > | > > > | ; > > > | return 0; > > > | } > > > configure:3468: error: in > > > `/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2': > > > configure:3470: error: C compiler cannot create executables > > > See `config.log' for more details > > > > > > > > > [2] Succeeds when run manually: > > > > > > gcc version 4.8.3 (GCC) > > > configure:3379: $? = 0 > > > configure:3368: gcc -V >&5 > > > gcc: error: unrecognized command line option '-V' > > > gcc: fatal error: no input files > > > compilation terminated. > > > configure:3379: $? = 1 > > > configure:3368: gcc -qversion >&5 > > > gcc: error: unrecognized command line option '-qversion' > > > gcc: fatal error: no input files > > > compilation terminated. > > > configure:3379: $? = 1 > > > configure:3399: checking whether the C compiler works > > > configure:3421: gcc > > > -I/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2/include > > > -O2 -DUTEST_CHECK -DSANITY_CHECK -DREFNAME=libcunitf_ -Wall -m64 > > > -DF_INTERFACE_GFORT -fPIC -DDYNAMIC_ARCH -DNO_AVX2 -DSMP_SERVER > > > -DNO_WARMUP -DMAX_CPU_NUMBER=64 -DASMNAME=libcunit > > > -DASMFNAME=libcunit_ -DNAME=libcunit_ -DCNAME=libcunit > > > -DCHAR_NAME="libcunit_" -DCHAR_CNAME="libcunit" -DNO_AFFINITY > > > -I.. > > > -DRELEASE=@RELEASE@ -Wall -W -pedantic -Wshadow -ansi > > > -I/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2/CUnit/Headers > > > > > > -L/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2/CUnit/Sources > > > conftest.c >&5 > > > configure:3425: $? = 0 > > > configure:3473: result: yes > > > > > > ============================= > > > > > > Trey Dockendorf > > > Systems Analyst I > > > Texas A&M University > > > Academy for Advanced Telecommunications and Learning Technologies > > > Phone: (979)458-2396 > > > Email: [email protected] > > > Jabber: [email protected] > > > > > > ----- Original Message ----- > > >> From: "Kenneth Hoste" <[email protected]> > > >> To: [email protected] > > >> Sent: Wednesday, August 27, 2014 2:31:25 PM > > >> Subject: Re: [easybuild] OpenBLAS with buildopts UTEST_CHECK=1 > > >> > > >> Hi Trey, > > >> > > >> On 27/08/14 21:25, Trey Dockendorf wrote: > > >>> I'm having an issue replicating in Easybuild what I can do > > >>> interactively when building OpenBLAS. > > >>> > > >>> Manually running 'make BINARY=64 DYNAMIC_ARCH=1 USE_THREAD=1 > > >>> NUM_THREADS=64 NO_AFFINITY=1 NO_AVX2=1 UTEST_CHECK=1' on the > > >>> source gives me no issue. > > >>> > > >>> Using as a base the Easyconfig for > > >>> OpenBLAS-0.2.9-GCC-4.8.3-LAPACK-3.5.0 [1] where I only changed > > >>> the > > >>> following: > > >>> > > >>> version = '0.2.10' > > >>> maxparallel = 1 # OpenBLAS will parallel build by default AFAIK > > >>> buildopts = 'BINARY=64 DYNAMIC_ARCH=1 USE_THREAD=1 > > >>> NUM_THREADS=64 > > >>> NO_AFFINITY=1 NO_AVX2=1 UTEST_CHECK=1' > > >>> > > >>> $ eb OpenBLAS-0.2.10-GCC-4.8.3-LAPACK-3.5.0.eb --robot=. > > >>> > > >>> # From the log file when it fails > > >>> > > >>> <snip> > > >>> checking for gcc... gcc > > >>> checking whether the C compiler works... no > > >>> configure: error: in > > >>> `/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2': > > >>> configure: error: C compiler cannot create executables > > >>> See `config.log' for more details > > >> Did you check this config.log file? The real reason will be in > > >> there > > >> somewhere (not at the very bottom though). > > >> > > >> Look for the string "checking whether the C compiler works". > > >> > > >> > > >> regards, > > >> > > >> Kenneth > > >> > > >>> make[1]: *** > > >>> [/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest/CUnit-2.1-2/lib/libcunit.a] > > >>> Error 77 > > >>> make[1]: Leaving directory > > >>> `/dev/shm/OpenBLAS/0.2.10/GCC-4.8.3-LAPACK-3.5.0/OpenBLAS-0.2.10/utest' > > >>> make: *** [tests] Error 2 > > >>> > > >>> == 2014-08-27 14:09:57,601 main.easyblock.<module> WARNING > > >>> build > > >>> failed (first 300 chars): EasyBuild crashed with an error (at > > >>> easybuild/tools/run.py:382 in parse_cmd_output): cmd " make -j > > >>> 1 > > >>> BINARY=64 DYNAMIC_ARCH=1 USE_THREAD=1 NUM_THREADS=64 > > >>> NO_AFFINITY=1 > > >>> NO_AVX2=1 UTEST_CHECK=1" exited with exitcode 2 and output: > > >>> > > >>> Thanks, > > >>> - Trey > > >>> > > >>> [1] : > > >>> https://github.com/hpcugent/easybuild-easyconfigs/blob/master/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.9-GCC-4.8.3-LAPACK-3.5.0.eb > > >>> > > >>> ============================= > > >>> > > >>> Trey Dockendorf > > >>> Systems Analyst I > > >>> Texas A&M University > > >>> Academy for Advanced Telecommunications and Learning > > >>> Technologies > > >>> Phone: (979)458-2396 > > >>> Email: [email protected] > > >>> Jabber: [email protected] > > >> > > > >
OpenBLAS-0.2.10-GCC-4.8.3-LAPACK-3.5.0.eb
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easybuild-OpenBLAS-0.2.10-20140827.154328.jlHtZ.log.tar.gz
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