Hello Kenneth and Niek,
thanks for your quick answers!
It wasn't clear to me from the documentation that easybuild directory also
needs __init__.py.
Now I got:
$ find easybuild
easybuild/__init__.py
easybuild/easyblocks
easybuild/easyblocks/__init__.py
easybuild/easyblocks/FastQC.py
easybuild/easyblocks/FastQC.pyc
And:
$ echo $PYTHONPATH
/tools/easybuild/software/EasyBuild/2.1.1/lib/python2.7/site-packages:/tools/easybuild.local/easybuild/easyblocks:/tools/easybuild.local:/tools/easybuild.local/easybuild/
It exists:
$ eb --list-easyblocks | grep -i fastqc
| |-- EB_FastQC
But I keep getting the same error. Any other ideas?
Cheers,
Oliver
________________________________________
From: [email protected] [[email protected]] on
behalf of Kenneth Hoste [[email protected]]
Sent: Tuesday, June 09, 2015 1:59 PM
To: [email protected]
Subject: Re: [easybuild] Setting up own easyblock repository
On 09/06/15 13:49, Niek de Klein wrote:
> Hello Oliver,
>
> I'm not part of the EasyBuild team but I think I see what goes wrong.
> I think you forgot to add the easyblock name. What is the class name
> you used in FastQC.py? For example, if in FastQC.py, under the imports
> you have
>
> class EB_FastQC(EasyBlock):
> ...
>
> You should add
>
> easyblock = 'EB_FastQC'
>
> in your FastQC-0.11.3.eb.
If no easyblock specification is given, EasyBuild will try to find the
easyblock that matches the software name.
Assuming the easyconfig file contains "name = 'FastQC' ", EB should be
looking for EB_FastQC by itself.
The error message shown below only mentions that the automagic fallback
to ConfigureMake is no longer there.
Oliver: if the information you've provided is complete, you're missing
an __init__.py file in the 'easybuild' directory too (that includes the
'extend_path' statement mentioned in the documentation.
regards,
Kenneth
>
> Hope this helps,
> Niek
>
> On Tue, Jun 9, 2015 at 1:43 PM, Stolpe, Oliver <[email protected]>
> wrote:
>> Hello Mailinglist,
>>
>> I wanted to setup my own EasyBlock repository. I followed the instructions
>> from
>> <https://github.com/hpcugent/easybuild/wiki/Setting-up-your-own-easyblocks-repository>.
>> Somehow it ignores my easyblock when I try to execute the config file. Any
>> help is appreciated!
>>
>> Cheers,
>> Oliver
>>
>> This is what I got:
>>
>> /tools/easybuild.local/easybuild/easyblocks
>> /tools/easybuild.local/easybuild/easyblocks/FastQC.py
>> /tools/easybuild.local/easybuild/easyblocks/__init__.py
>>
>> $ echo $PYTHONPATH
>> /tools/easybuild/software/EasyBuild/2.1.1/lib/python2.7/site-packages:/tools/easybuild.local
>>
>> $ head FastQC-0.11.3.eb
>> name = 'FastQC'
>> version = '0.11.3'
>>
>> homepage = 'http://www.bioinformatics.babraham.ac.uk/projects/fastqc'
>>
>> $ eb FastQC-0.11.3.eb
>> == temporary log file in case of crash /tmp/eb-hJyLxt/easybuild-NGWQ6S.log
>> ERROR: Failed to process easyconfig
>> /tools/easybuild.local/easyconfigs/f/FastQC/FastQC-0.11.3.eb: NO LONGER
>> SUPPORTED since v2.0: Fallback to default easyblock ConfigureMake (from
>> easybuild.easyblocks.generic.configuremake); use "easyblock =
>> 'ConfigureMake'" in easyconfig file?; see
>> http://easybuild.readthedocs.org/en/latest/Deprecated-functionality.html for
>> more information
>>
