Hello Kenneth, please find the requested files attached! I also attached the recipy. In the log file I found these lines suspicious:
== 2015-06-09 13:17:14,712 main.easyconfig.easyconfig DEBUG Failed to import module 'easybuild.easyblocks.fastqc': No module named fastqc == 2015-06-09 13:17:14,713 main.easyconfig.easyconfig DEBUG No module path 'easybuild.easyblocks.fastqc' found == 2015-06-09 13:17:14,713 main.easyconfig.easyconfig DEBUG Module path determined based on software name: easybuild.easyblocks.fastqc == 2015-06-09 13:17:14,713 main.easyconfig.easyconfig DEBUG getting class for easybuild.easyblocks.fastqc.EB_FastQC == 2015-06-09 13:17:14,713 main.easyconfig.easyconfig DEBUG error regexp: No module named fastqc Cheers, Oliver ________________________________________ From: [email protected] [[email protected]] on behalf of Kenneth Hoste [[email protected]] Sent: Tuesday, June 09, 2015 3:08 PM To: [email protected] Subject: Re: [easybuild] Setting up own easyblock repository Hi Oliver, On 09/06/15 14:17, Stolpe, Oliver wrote: > Hello Kenneth and Niek, > > thanks for your quick answers! > It wasn't clear to me from the documentation that easybuild directory also > needs __init__.py. > > Now I got: > > $ find easybuild > easybuild/__init__.py > easybuild/easyblocks > easybuild/easyblocks/__init__.py > easybuild/easyblocks/FastQC.py > easybuild/easyblocks/FastQC.pyc > > And: > > $ echo $PYTHONPATH > /tools/easybuild/software/EasyBuild/2.1.1/lib/python2.7/site-packages:/tools/easybuild.local/easybuild/easyblocks:/tools/easybuild.local:/tools/easybuild.local/easybuild/ > > It exists: > > $ eb --list-easyblocks | grep -i fastqc > | |-- EB_FastQC OK, this confirm your easyblock can be found, indeed. > > But I keep getting the same error. Any other ideas? Can we see the full easyconfig file you're using, and maybe also the full log file (ideally, from a run where --debug was used)? regards, Kenneth > > Cheers, > Oliver > > > ________________________________________ > From: [email protected] [[email protected]] on > behalf of Kenneth Hoste [[email protected]] > Sent: Tuesday, June 09, 2015 1:59 PM > To: [email protected] > Subject: Re: [easybuild] Setting up own easyblock repository > > On 09/06/15 13:49, Niek de Klein wrote: >> Hello Oliver, >> >> I'm not part of the EasyBuild team but I think I see what goes wrong. >> I think you forgot to add the easyblock name. What is the class name >> you used in FastQC.py? For example, if in FastQC.py, under the imports >> you have >> >> class EB_FastQC(EasyBlock): >> ... >> >> You should add >> >> easyblock = 'EB_FastQC' >> >> in your FastQC-0.11.3.eb. > If no easyblock specification is given, EasyBuild will try to find the > easyblock that matches the software name. > > Assuming the easyconfig file contains "name = 'FastQC' ", EB should be > looking for EB_FastQC by itself. > > The error message shown below only mentions that the automagic fallback > to ConfigureMake is no longer there. > > Oliver: if the information you've provided is complete, you're missing > an __init__.py file in the 'easybuild' directory too (that includes the > 'extend_path' statement mentioned in the documentation. > > > regards, > > Kenneth >> Hope this helps, >> Niek >> >> On Tue, Jun 9, 2015 at 1:43 PM, Stolpe, Oliver <[email protected]> >> wrote: >>> Hello Mailinglist, >>> >>> I wanted to setup my own EasyBlock repository. I followed the instructions >>> from >>> <https://github.com/hpcugent/easybuild/wiki/Setting-up-your-own-easyblocks-repository>. >>> Somehow it ignores my easyblock when I try to execute the config file. Any >>> help is appreciated! >>> >>> Cheers, >>> Oliver >>> >>> This is what I got: >>> >>> /tools/easybuild.local/easybuild/easyblocks >>> /tools/easybuild.local/easybuild/easyblocks/FastQC.py >>> /tools/easybuild.local/easybuild/easyblocks/__init__.py >>> >>> $ echo $PYTHONPATH >>> /tools/easybuild/software/EasyBuild/2.1.1/lib/python2.7/site-packages:/tools/easybuild.local >>> >>> $ head FastQC-0.11.3.eb >>> name = 'FastQC' >>> version = '0.11.3' >>> >>> homepage = 'http://www.bioinformatics.babraham.ac.uk/projects/fastqc' >>> >>> $ eb FastQC-0.11.3.eb >>> == temporary log file in case of crash /tmp/eb-hJyLxt/easybuild-NGWQ6S.log >>> ERROR: Failed to process easyconfig >>> /tools/easybuild.local/easyconfigs/f/FastQC/FastQC-0.11.3.eb: NO LONGER >>> SUPPORTED since v2.0: Fallback to default easyblock ConfigureMake (from >>> easybuild.easyblocks.generic.configuremake); use "easyblock = >>> 'ConfigureMake'" in easyconfig file?; see >>> http://easybuild.readthedocs.org/en/latest/Deprecated-functionality.html for >>> more information >>>
== 2015-06-09 13:17:14,537 main.EasyBuildOptions DEBUG generate_cmd_line no ignore
== 2015-06-09 13:17:14,537 main.EasyBuildOptions DEBUG generate_cmd_line adding aggregate-regtest value None default found. Not adding to args.
== 2015-06-09 13:17:14,538 main.EasyBuildOptions DEBUG generate_cmd_line adding allow-modules-tool-mismatch value False default found. Not adding to args.
== 2015-06-09 13:17:14,538 main.EasyBuildOptions DEBUG generate_cmd_line adding amend value None default found. Not adding to args.
== 2015-06-09 13:17:14,539 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-cfgfile-constants value False default found. Not adding to args.
== 2015-06-09 13:17:14,539 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-constants value False default found. Not adding to args.
== 2015-06-09 13:17:14,539 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-licenses value False default found. Not adding to args.
== 2015-06-09 13:17:14,540 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-params value None. None found. not adding to args.
== 2015-06-09 13:17:14,540 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-templates value False default found. Not adding to args.
== 2015-06-09 13:17:14,540 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-module-naming-schemes value False default found. Not adding to args.
== 2015-06-09 13:17:14,541 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-modules-tools value False default found. Not adding to args.
== 2015-06-09 13:17:14,541 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-repositories value False default found. Not adding to args.
== 2015-06-09 13:17:14,542 main.EasyBuildOptions DEBUG generate_cmd_line adding buildpath value /tools/easybuild/build
== 2015-06-09 13:17:14,542 main.EasyBuildOptions DEBUG generate_cmd_line adding cleanup-builddir value True default found. Not adding to args.
== 2015-06-09 13:17:14,542 main.EasyBuildOptions DEBUG generate_cmd_line adding configfiles value ['/etc/easybuild.d/config.cfg'] default found. Not adding to args.
== 2015-06-09 13:17:14,543 main.EasyBuildOptions DEBUG generate_cmd_line adding debug value True. store action found
== 2015-06-09 13:17:14,543 main.EasyBuildOptions DEBUG generate_cmd_line adding dep-graph value None default found. Not adding to args.
== 2015-06-09 13:17:14,543 main.EasyBuildOptions DEBUG generate_cmd_line adding deprecated value None default found. Not adding to args.
== 2015-06-09 13:17:14,543 main.EasyBuildOptions DEBUG generate_cmd_line adding download-timeout value None default found. Not adding to args.
== 2015-06-09 13:17:14,544 main.EasyBuildOptions DEBUG generate_cmd_line adding dry-run value False default found. Not adding to args.
== 2015-06-09 13:17:14,544 main.EasyBuildOptions DEBUG generate_cmd_line adding dry-run-short value False default found. Not adding to args.
== 2015-06-09 13:17:14,544 main.EasyBuildOptions DEBUG generate_cmd_line adding dump-test-report value None. None found. not adding to args.
== 2015-06-09 13:17:14,544 main.EasyBuildOptions DEBUG generate_cmd_line adding easyblock value None default found. Not adding to args.
== 2015-06-09 13:17:14,544 main.EasyBuildOptions DEBUG generate_cmd_line adding experimental value False default found. Not adding to args.
== 2015-06-09 13:17:14,544 main.EasyBuildOptions DEBUG generate_cmd_line adding external-modules-metadata value [] default found. Not adding to args.
== 2015-06-09 13:17:14,545 main.EasyBuildOptions DEBUG generate_cmd_line adding filter-deps value None default found. Not adding to args.
== 2015-06-09 13:17:14,545 main.EasyBuildOptions DEBUG generate_cmd_line adding force value False default found. Not adding to args.
== 2015-06-09 13:17:14,545 main.EasyBuildOptions DEBUG generate_cmd_line adding from-pr value None default found. Not adding to args.
== 2015-06-09 13:17:14,545 main.EasyBuildOptions DEBUG generate_cmd_line adding github-user value None default found. Not adding to args.
== 2015-06-09 13:17:14,545 main.EasyBuildOptions DEBUG generate_cmd_line adding group value None default found. Not adding to args.
== 2015-06-09 13:17:14,545 main.EasyBuildOptions DEBUG generate_cmd_line adding hidden value False default found. Not adding to args.
== 2015-06-09 13:17:14,545 main.EasyBuildOptions DEBUG generate_cmd_line adding hide-deps value None default found. Not adding to args.
== 2015-06-09 13:17:14,546 main.EasyBuildOptions DEBUG generate_cmd_line adding ignore-dirs value ['.git', '.svn'] default found. Not adding to args.
== 2015-06-09 13:17:14,546 main.EasyBuildOptions DEBUG generate_cmd_line adding ignore-osdeps value False default found. Not adding to args.
== 2015-06-09 13:17:14,546 main.EasyBuildOptions DEBUG generate_cmd_line adding ignoreconfigfiles value None default found. Not adding to args.
== 2015-06-09 13:17:14,546 main.EasyBuildOptions DEBUG generate_cmd_line adding info value False default found. Not adding to args.
== 2015-06-09 13:17:14,546 main.EasyBuildOptions DEBUG generate_cmd_line adding installpath value /tools/easybuild
== 2015-06-09 13:17:14,546 main.EasyBuildOptions DEBUG generate_cmd_line adding installpath-modules value None default found. Not adding to args.
== 2015-06-09 13:17:14,547 main.EasyBuildOptions DEBUG generate_cmd_line adding installpath-software value None default found. Not adding to args.
== 2015-06-09 13:17:14,547 main.EasyBuildOptions DEBUG generate_cmd_line adding job value False default found. Not adding to args.
== 2015-06-09 13:17:14,547 main.EasyBuildOptions DEBUG generate_cmd_line adding list-easyblocks value None. None found. not adding to args.
== 2015-06-09 13:17:14,547 main.EasyBuildOptions DEBUG generate_cmd_line adding list-toolchains value False default found. Not adding to args.
== 2015-06-09 13:17:14,547 main.EasyBuildOptions DEBUG generate_cmd_line adding logfile-format value ('easybuild', 'easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log') default found. Not adding to args.
== 2015-06-09 13:17:14,547 main.EasyBuildOptions DEBUG generate_cmd_line adding logtostdout value False default found. Not adding to args.
== 2015-06-09 13:17:14,548 main.EasyBuildOptions DEBUG generate_cmd_line adding module-naming-scheme value EasyBuildMNS default found. Not adding to args.
== 2015-06-09 13:17:14,548 main.EasyBuildOptions DEBUG generate_cmd_line adding module-only value False default found. Not adding to args.
== 2015-06-09 13:17:14,548 main.EasyBuildOptions DEBUG generate_cmd_line adding module-syntax value Tcl default found. Not adding to args.
== 2015-06-09 13:17:14,548 main.EasyBuildOptions DEBUG generate_cmd_line adding moduleclasses value ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis'] default found. Not adding to args.
== 2015-06-09 13:17:14,548 main.EasyBuildOptions DEBUG generate_cmd_line adding modules-footer value None default found.
== 2015-06-09 13:17:14,548 main.EasyBuildOptions DEBUG generate_cmd_line adding modules-footer value None. None found. not adding to args.
== 2015-06-09 13:17:14,548 main.EasyBuildOptions DEBUG generate_cmd_line adding modules-tool value EnvironmentModulesC default found. Not adding to args.
== 2015-06-09 13:17:14,549 main.EasyBuildOptions DEBUG generate_cmd_line adding only-blocks value None default found. Not adding to args.
== 2015-06-09 13:17:14,549 main.EasyBuildOptions DEBUG generate_cmd_line adding optarch value None default found. Not adding to args.
== 2015-06-09 13:17:14,549 main.EasyBuildOptions DEBUG generate_cmd_line adding prefix value /tools/easybuild
== 2015-06-09 13:17:14,549 main.EasyBuildOptions DEBUG generate_cmd_line adding pretend value False default found. Not adding to args.
== 2015-06-09 13:17:14,549 main.EasyBuildOptions DEBUG generate_cmd_line adding quiet value False default found. Not adding to args.
== 2015-06-09 13:17:14,549 main.EasyBuildOptions DEBUG generate_cmd_line adding recursive-module-unload value False default found. Not adding to args.
== 2015-06-09 13:17:14,549 main.EasyBuildOptions DEBUG generate_cmd_line adding regtest value False default found. Not adding to args.
== 2015-06-09 13:17:14,550 main.EasyBuildOptions DEBUG generate_cmd_line adding regtest-output-dir value None default found. Not adding to args.
== 2015-06-09 13:17:14,550 main.EasyBuildOptions DEBUG generate_cmd_line adding repository value FileRepository default found. Not adding to args.
== 2015-06-09 13:17:14,550 main.EasyBuildOptions DEBUG generate_cmd_line adding robot value None. None found. not adding to args.
== 2015-06-09 13:17:14,550 main.EasyBuildOptions DEBUG generate_cmd_line adding robot-paths value ['/tools/easybuild.local/easyconfigs', '']. add_flex action, return as pathsep-separated list
== 2015-06-09 13:17:14,550 main.EasyBuildOptions DEBUG generate_cmd_line adding search value None default found. Not adding to args.
== 2015-06-09 13:17:14,550 main.EasyBuildOptions DEBUG generate_cmd_line adding search-short value None default found. Not adding to args.
== 2015-06-09 13:17:14,551 main.EasyBuildOptions DEBUG generate_cmd_line adding sequential value False default found. Not adding to args.
== 2015-06-09 13:17:14,551 main.EasyBuildOptions DEBUG generate_cmd_line adding set-gid-bit value False default found. Not adding to args.
== 2015-06-09 13:17:14,551 main.EasyBuildOptions DEBUG generate_cmd_line adding show-default-configfiles value False default found. Not adding to args.
== 2015-06-09 13:17:14,551 main.EasyBuildOptions DEBUG generate_cmd_line adding show-default-moduleclasses value False default found. Not adding to args.
== 2015-06-09 13:17:14,551 main.EasyBuildOptions DEBUG generate_cmd_line adding skip value False default found. Not adding to args.
== 2015-06-09 13:17:14,551 main.EasyBuildOptions DEBUG generate_cmd_line adding skip-test-cases value False default found. Not adding to args.
== 2015-06-09 13:17:14,551 main.EasyBuildOptions DEBUG generate_cmd_line adding software value None default found. Not adding to args.
== 2015-06-09 13:17:14,552 main.EasyBuildOptions DEBUG generate_cmd_line adding software-name value None default found. Not adding to args.
== 2015-06-09 13:17:14,552 main.EasyBuildOptions DEBUG generate_cmd_line adding software-version value None default found. Not adding to args.
== 2015-06-09 13:17:14,552 main.EasyBuildOptions DEBUG generate_cmd_line adding sourcepath value /tools/easybuild/sources
== 2015-06-09 13:17:14,552 main.EasyBuildOptions DEBUG generate_cmd_line adding sticky-bit value False default found. Not adding to args.
== 2015-06-09 13:17:14,552 main.EasyBuildOptions DEBUG generate_cmd_line adding stop value None. None found. not adding to args.
== 2015-06-09 13:17:14,552 main.EasyBuildOptions DEBUG generate_cmd_line adding strict value warn default found. Not adding to args.
== 2015-06-09 13:17:14,552 main.EasyBuildOptions DEBUG generate_cmd_line adding subdir-modules value modules default found. Not adding to args.
== 2015-06-09 13:17:14,553 main.EasyBuildOptions DEBUG generate_cmd_line adding subdir-software value software default found. Not adding to args.
== 2015-06-09 13:17:14,553 main.EasyBuildOptions DEBUG generate_cmd_line adding suffix-modules-path value all default found. Not adding to args.
== 2015-06-09 13:17:14,553 main.EasyBuildOptions DEBUG generate_cmd_line adding test-report-env-filter value None default found. Not adding to args.
== 2015-06-09 13:17:14,553 main.EasyBuildOptions DEBUG generate_cmd_line adding testoutput value None default found. Not adding to args.
== 2015-06-09 13:17:14,553 main.EasyBuildOptions DEBUG generate_cmd_line adding tmp-logdir value None default found. Not adding to args.
== 2015-06-09 13:17:14,553 main.EasyBuildOptions DEBUG generate_cmd_line adding tmpdir value None default found. Not adding to args.
== 2015-06-09 13:17:14,554 main.EasyBuildOptions DEBUG generate_cmd_line adding toolchain value None default found. Not adding to args.
== 2015-06-09 13:17:14,554 main.EasyBuildOptions DEBUG generate_cmd_line adding toolchain-name value None default found. Not adding to args.
== 2015-06-09 13:17:14,554 main.EasyBuildOptions DEBUG generate_cmd_line adding toolchain-version value None default found. Not adding to args.
== 2015-06-09 13:17:14,554 main.EasyBuildOptions DEBUG generate_cmd_line adding try-amend value None default found. Not adding to args.
== 2015-06-09 13:17:14,554 main.EasyBuildOptions DEBUG generate_cmd_line adding try-software value None default found. Not adding to args.
== 2015-06-09 13:17:14,554 main.EasyBuildOptions DEBUG generate_cmd_line adding try-software-name value None default found. Not adding to args.
== 2015-06-09 13:17:14,555 main.EasyBuildOptions DEBUG generate_cmd_line adding try-software-version value None default found. Not adding to args.
== 2015-06-09 13:17:14,555 main.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain value None default found. Not adding to args.
== 2015-06-09 13:17:14,555 main.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain-name value None default found. Not adding to args.
== 2015-06-09 13:17:14,555 main.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain-version value None default found. Not adding to args.
== 2015-06-09 13:17:14,555 main.EasyBuildOptions DEBUG generate_cmd_line adding umask value None default found. Not adding to args.
== 2015-06-09 13:17:14,555 main.EasyBuildOptions DEBUG generate_cmd_line adding unittest-file value None default found. Not adding to args.
== 2015-06-09 13:17:14,555 main.EasyBuildOptions DEBUG generate_cmd_line adding update-modules-tool-cache value False default found. Not adding to args.
== 2015-06-09 13:17:14,556 main.EasyBuildOptions DEBUG generate_cmd_line adding upload-test-report value False default found. Not adding to args.
== 2015-06-09 13:17:14,556 main.EasyBuildOptions DEBUG commandline args ['--buildpath=/tools/easybuild/build', '--debug', '--installpath=/tools/easybuild', '--prefix=/tools/easybuild', '--repositorypath=/tools/easybuild/ebfiles_repo', '--robot-paths=/tools/easybuild.local/easyconfigs:', '--sourcepath=/tools/easybuild/sources']
== 2015-06-09 13:17:14,556 main INFO This is EasyBuild 2.1.1 (framework: 2.1.1, easyblocks: 2.1.1) on host bb7b103a5bd5.
== 2015-06-09 13:17:14,557 main INFO Command line: --buildpath=/tools/easybuild/build --debug --installpath=/tools/easybuild --prefix=/tools/easybuild --repositorypath=/tools/easybuild/ebfiles_repo --robot-paths=/tools/easybuild.local/easyconfigs: --sourcepath=/tools/easybuild/sources FastQC-0.11.3.eb
== 2015-06-09 13:17:14,557 main INFO Using /tmp/eb-8pseus as temporary directory
== 2015-06-09 13:17:14,558 main.tools.robot INFO Using robot path(s): ['/tools/easybuild.local/easyconfigs', '/tools/easybuild/software/EasyBuild/2.1.1/lib/python2.7/site-packages/easybuild_easyconfigs-2.1.1-py2.7.egg/easybuild/easyconfigs']
== 2015-06-09 13:17:14,558 main DEBUG Full robot path: ['/tools/easybuild.local/easyconfigs', '/tools/easybuild/software/EasyBuild/2.1.1/lib/python2.7/site-packages/easybuild_easyconfigs-2.1.1-py2.7.egg/easybuild/easyconfigs']
== 2015-06-09 13:17:14,559 main.config DEBUG Converted source path ('/tools/easybuild/sources') to a list of paths: ['/tools/easybuild/sources']
== 2015-06-09 13:17:14,559 main.ConfigurationVariables DEBUG Ignoring unknown key 'avail_module_naming_schemes' (value 'False')
== 2015-06-09 13:17:14,559 main.ConfigurationVariables DEBUG Ignoring unknown key 'modules_footer' (value 'None')
== 2015-06-09 13:17:14,559 main.ConfigurationVariables DEBUG Ignoring unknown key 'tmpdir' (value 'None')
== 2015-06-09 13:17:14,559 main.ConfigurationVariables DEBUG Ignoring unknown key 'avail_modules_tools' (value 'False')
== 2015-06-09 13:17:14,560 main.ConfigurationVariables DEBUG Ignoring unknown key 'suffix_modules_path' (value 'all')
== 2015-06-09 13:17:14,560 main.ConfigurationVariables DEBUG Ignoring unknown key 'recursive_module_unload' (value 'False')
== 2015-06-09 13:17:14,560 main.ConfigurationVariables DEBUG Ignoring unknown key 'testoutput' (value 'None')
== 2015-06-09 13:17:14,560 main.ConfigurationVariables DEBUG Ignoring unknown key 'avail_repositories' (value 'False')
== 2015-06-09 13:17:14,560 main.ConfigurationVariables DEBUG Ignoring unknown key 'external_modules_metadata' (value '[]')
== 2015-06-09 13:17:14,560 main.ConfigurationVariables DEBUG Ignoring unknown key 'ignore_dirs' (value '['.git', '.svn']')
== 2015-06-09 13:17:14,560 main.config DEBUG Config variables: <FrozenDict {'buildpath': '/tools/easybuild/build', 'repository': 'FileRepository', 'module_naming_scheme': 'EasyBuildMNS', 'module_syntax': 'Tcl', 'tmp_logdir': None, 'moduleclasses': ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis'], 'prefix': '/tools/easybuild', 'installpath_software': None, 'installpath_modules': None, 'repositorypath': ['/tools/easybuild/ebfiles_repo'], 'modules_tool': 'EnvironmentModulesC', 'subdir_modules': 'modules', 'logfile_format': ('easybuild', 'easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'), 'installpath': '/tools/easybuild', 'sourcepath': ['/tools/easybuild/sources'], 'subdir_software': 'software'}>
== 2015-06-09 13:17:14,561 main.EasyBuildOptions DEBUG generate_cmd_line no ignore
== 2015-06-09 13:17:14,561 main.EasyBuildOptions DEBUG generate_cmd_line adding aggregate-regtest value None default found.
== 2015-06-09 13:17:14,561 main.EasyBuildOptions DEBUG generate_cmd_line adding aggregate-regtest value None. None found. not adding to args.
== 2015-06-09 13:17:14,561 main.EasyBuildOptions DEBUG generate_cmd_line adding allow-modules-tool-mismatch value False default found.
== 2015-06-09 13:17:14,561 main.EasyBuildOptions DEBUG generate_cmd_line adding allow-modules-tool-mismatch value False. store action found
== 2015-06-09 13:17:14,561 main.EasyBuildOptions DEBUG generate_cmd_line adding amend value None default found.
== 2015-06-09 13:17:14,562 main.EasyBuildOptions DEBUG generate_cmd_line adding amend value None. None found. not adding to args.
== 2015-06-09 13:17:14,562 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-cfgfile-constants value False default found.
== 2015-06-09 13:17:14,562 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-cfgfile-constants value False. store action found
== 2015-06-09 13:17:14,562 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-constants value False default found.
== 2015-06-09 13:17:14,562 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-constants value False. store action found
== 2015-06-09 13:17:14,562 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-licenses value False default found.
== 2015-06-09 13:17:14,562 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-licenses value False. store action found
== 2015-06-09 13:17:14,562 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-params value None. None found. not adding to args.
== 2015-06-09 13:17:14,563 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-templates value False default found.
== 2015-06-09 13:17:14,563 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-templates value False. store action found
== 2015-06-09 13:17:14,563 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-module-naming-schemes value False default found.
== 2015-06-09 13:17:14,563 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-module-naming-schemes value False. store action found
== 2015-06-09 13:17:14,563 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-modules-tools value False default found.
== 2015-06-09 13:17:14,563 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-modules-tools value False. store action found
== 2015-06-09 13:17:14,563 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-repositories value False default found.
== 2015-06-09 13:17:14,563 main.EasyBuildOptions DEBUG generate_cmd_line adding avail-repositories value False. store action found
== 2015-06-09 13:17:14,564 main.EasyBuildOptions DEBUG generate_cmd_line adding buildpath value /tools/easybuild/build
== 2015-06-09 13:17:14,564 main.EasyBuildOptions DEBUG generate_cmd_line adding cleanup-builddir value True default found.
== 2015-06-09 13:17:14,564 main.EasyBuildOptions DEBUG generate_cmd_line adding cleanup-builddir value True. store action found
== 2015-06-09 13:17:14,564 main.EasyBuildOptions DEBUG generate_cmd_line adding configfiles value ['/etc/easybuild.d/config.cfg'] default found.
== 2015-06-09 13:17:14,564 main.EasyBuildOptions DEBUG generate_cmd_line no value left, skipping.
== 2015-06-09 13:17:14,564 main.EasyBuildOptions DEBUG generate_cmd_line adding debug value True. store action found
== 2015-06-09 13:17:14,564 main.EasyBuildOptions DEBUG generate_cmd_line adding dep-graph value None default found.
== 2015-06-09 13:17:14,564 main.EasyBuildOptions DEBUG generate_cmd_line adding dep-graph value None. None found. not adding to args.
== 2015-06-09 13:17:14,564 main.EasyBuildOptions DEBUG generate_cmd_line adding deprecated value None default found.
== 2015-06-09 13:17:14,565 main.EasyBuildOptions DEBUG generate_cmd_line adding deprecated value None. None found. not adding to args.
== 2015-06-09 13:17:14,565 main.EasyBuildOptions DEBUG generate_cmd_line adding download-timeout value None default found.
== 2015-06-09 13:17:14,565 main.EasyBuildOptions DEBUG generate_cmd_line adding download-timeout value None. None found. not adding to args.
== 2015-06-09 13:17:14,565 main.EasyBuildOptions DEBUG generate_cmd_line adding dry-run value False default found.
== 2015-06-09 13:17:14,565 main.EasyBuildOptions DEBUG generate_cmd_line adding dry-run value False. store action found
== 2015-06-09 13:17:14,565 main.EasyBuildOptions DEBUG generate_cmd_line adding dry-run-short value False default found.
== 2015-06-09 13:17:14,565 main.EasyBuildOptions DEBUG generate_cmd_line adding dry-run-short value False. store action found
== 2015-06-09 13:17:14,565 main.EasyBuildOptions DEBUG generate_cmd_line adding dump-test-report value None. None found. not adding to args.
== 2015-06-09 13:17:14,566 main.EasyBuildOptions DEBUG generate_cmd_line adding easyblock value None default found.
== 2015-06-09 13:17:14,566 main.EasyBuildOptions DEBUG generate_cmd_line adding easyblock value None. None found. not adding to args.
== 2015-06-09 13:17:14,566 main.EasyBuildOptions DEBUG generate_cmd_line adding experimental value False default found.
== 2015-06-09 13:17:14,566 main.EasyBuildOptions DEBUG generate_cmd_line adding experimental value False. store action found
== 2015-06-09 13:17:14,566 main.EasyBuildOptions DEBUG generate_cmd_line adding external-modules-metadata value [] default found.
== 2015-06-09 13:17:14,566 main.EasyBuildOptions DEBUG generate_cmd_line adding filter-deps value None default found.
== 2015-06-09 13:17:14,566 main.EasyBuildOptions DEBUG generate_cmd_line adding filter-deps value None. None found. not adding to args.
== 2015-06-09 13:17:14,566 main.EasyBuildOptions DEBUG generate_cmd_line adding force value False default found.
== 2015-06-09 13:17:14,567 main.EasyBuildOptions DEBUG generate_cmd_line adding force value False. store action found
== 2015-06-09 13:17:14,567 main.EasyBuildOptions DEBUG generate_cmd_line adding from-pr value None default found.
== 2015-06-09 13:17:14,567 main.EasyBuildOptions DEBUG generate_cmd_line adding from-pr value None. None found. not adding to args.
== 2015-06-09 13:17:14,567 main.EasyBuildOptions DEBUG generate_cmd_line adding github-user value None default found.
== 2015-06-09 13:17:14,567 main.EasyBuildOptions DEBUG generate_cmd_line adding github-user value None. None found. not adding to args.
== 2015-06-09 13:17:14,567 main.EasyBuildOptions DEBUG generate_cmd_line adding group value None default found.
== 2015-06-09 13:17:14,567 main.EasyBuildOptions DEBUG generate_cmd_line adding group value None. None found. not adding to args.
== 2015-06-09 13:17:14,567 main.EasyBuildOptions DEBUG generate_cmd_line adding hidden value False default found.
== 2015-06-09 13:17:14,567 main.EasyBuildOptions DEBUG generate_cmd_line adding hidden value False. store action found
== 2015-06-09 13:17:14,568 main.EasyBuildOptions DEBUG generate_cmd_line adding hide-deps value None default found.
== 2015-06-09 13:17:14,568 main.EasyBuildOptions DEBUG generate_cmd_line adding hide-deps value None. None found. not adding to args.
== 2015-06-09 13:17:14,568 main.EasyBuildOptions DEBUG generate_cmd_line adding ignore-dirs value ['.git', '.svn'] default found.
== 2015-06-09 13:17:14,568 main.EasyBuildOptions DEBUG generate_cmd_line adding ignore-osdeps value False default found.
== 2015-06-09 13:17:14,568 main.EasyBuildOptions DEBUG generate_cmd_line adding ignore-osdeps value False. store action found
== 2015-06-09 13:17:14,568 main.EasyBuildOptions DEBUG generate_cmd_line adding ignoreconfigfiles value None default found.
== 2015-06-09 13:17:14,568 main.EasyBuildOptions DEBUG generate_cmd_line adding ignoreconfigfiles value None. None found. not adding to args.
== 2015-06-09 13:17:14,568 main.EasyBuildOptions DEBUG generate_cmd_line adding info value False default found.
== 2015-06-09 13:17:14,569 main.EasyBuildOptions DEBUG generate_cmd_line adding info value False. store action found
== 2015-06-09 13:17:14,569 main.EasyBuildOptions DEBUG generate_cmd_line adding installpath value /tools/easybuild
== 2015-06-09 13:17:14,569 main.EasyBuildOptions DEBUG generate_cmd_line adding installpath-modules value None default found.
== 2015-06-09 13:17:14,569 main.EasyBuildOptions DEBUG generate_cmd_line adding installpath-modules value None. None found. not adding to args.
== 2015-06-09 13:17:14,569 main.EasyBuildOptions DEBUG generate_cmd_line adding installpath-software value None default found.
== 2015-06-09 13:17:14,569 main.EasyBuildOptions DEBUG generate_cmd_line adding installpath-software value None. None found. not adding to args.
== 2015-06-09 13:17:14,569 main.EasyBuildOptions DEBUG generate_cmd_line adding job value False default found.
== 2015-06-09 13:17:14,569 main.EasyBuildOptions DEBUG generate_cmd_line adding job value False. store action found
== 2015-06-09 13:17:14,570 main.EasyBuildOptions DEBUG generate_cmd_line adding list-easyblocks value None. None found. not adding to args.
== 2015-06-09 13:17:14,570 main.EasyBuildOptions DEBUG generate_cmd_line adding list-toolchains value False default found.
== 2015-06-09 13:17:14,570 main.EasyBuildOptions DEBUG generate_cmd_line adding list-toolchains value False. store action found
== 2015-06-09 13:17:14,570 main.EasyBuildOptions DEBUG generate_cmd_line adding logfile-format value ('easybuild', 'easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log') default found.
== 2015-06-09 13:17:14,570 main.EasyBuildOptions DEBUG generate_cmd_line adding logtostdout value False default found.
== 2015-06-09 13:17:14,570 main.EasyBuildOptions DEBUG generate_cmd_line adding logtostdout value False. store action found
== 2015-06-09 13:17:14,570 main.EasyBuildOptions DEBUG generate_cmd_line adding module-naming-scheme value EasyBuildMNS default found.
== 2015-06-09 13:17:14,570 main.EasyBuildOptions DEBUG generate_cmd_line adding module-naming-scheme value EasyBuildMNS
== 2015-06-09 13:17:14,571 main.EasyBuildOptions DEBUG generate_cmd_line adding module-only value False default found.
== 2015-06-09 13:17:14,571 main.EasyBuildOptions DEBUG generate_cmd_line adding module-only value False. store action found
== 2015-06-09 13:17:14,571 main.EasyBuildOptions DEBUG generate_cmd_line adding module-syntax value Tcl default found.
== 2015-06-09 13:17:14,571 main.EasyBuildOptions DEBUG generate_cmd_line adding module-syntax value Tcl
== 2015-06-09 13:17:14,571 main.EasyBuildOptions DEBUG generate_cmd_line adding moduleclasses value ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis'] default found.
== 2015-06-09 13:17:14,571 main.EasyBuildOptions DEBUG generate_cmd_line adding moduleclasses value ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis']
== 2015-06-09 13:17:14,571 main.EasyBuildOptions DEBUG generate_cmd_line adding modules-footer value None default found.
== 2015-06-09 13:17:14,571 main.EasyBuildOptions DEBUG generate_cmd_line adding modules-footer value None. None found. not adding to args.
== 2015-06-09 13:17:14,572 main.EasyBuildOptions DEBUG generate_cmd_line adding modules-tool value EnvironmentModulesC default found.
== 2015-06-09 13:17:14,572 main.EasyBuildOptions DEBUG generate_cmd_line adding modules-tool value EnvironmentModulesC
== 2015-06-09 13:17:14,572 main.EasyBuildOptions DEBUG generate_cmd_line adding only-blocks value None default found.
== 2015-06-09 13:17:14,572 main.EasyBuildOptions DEBUG generate_cmd_line adding only-blocks value None. None found. not adding to args.
== 2015-06-09 13:17:14,572 main.EasyBuildOptions DEBUG generate_cmd_line adding optarch value None default found.
== 2015-06-09 13:17:14,572 main.EasyBuildOptions DEBUG generate_cmd_line adding optarch value None. None found. not adding to args.
== 2015-06-09 13:17:14,572 main.EasyBuildOptions DEBUG generate_cmd_line adding prefix value /tools/easybuild
== 2015-06-09 13:17:14,572 main.EasyBuildOptions DEBUG generate_cmd_line adding pretend value False default found.
== 2015-06-09 13:17:14,573 main.EasyBuildOptions DEBUG generate_cmd_line adding pretend value False. store action found
== 2015-06-09 13:17:14,573 main.EasyBuildOptions DEBUG generate_cmd_line adding quiet value False default found.
== 2015-06-09 13:17:14,573 main.EasyBuildOptions DEBUG generate_cmd_line adding quiet value False. store action found
== 2015-06-09 13:17:14,573 main.EasyBuildOptions DEBUG generate_cmd_line adding recursive-module-unload value False default found.
== 2015-06-09 13:17:14,573 main.EasyBuildOptions DEBUG generate_cmd_line adding recursive-module-unload value False. store action found
== 2015-06-09 13:17:14,573 main.EasyBuildOptions DEBUG generate_cmd_line adding regtest value False default found.
== 2015-06-09 13:17:14,573 main.EasyBuildOptions DEBUG generate_cmd_line adding regtest value False. store action found
== 2015-06-09 13:17:14,573 main.EasyBuildOptions DEBUG generate_cmd_line adding regtest-output-dir value None default found.
== 2015-06-09 13:17:14,573 main.EasyBuildOptions DEBUG generate_cmd_line adding regtest-output-dir value None. None found. not adding to args.
== 2015-06-09 13:17:14,574 main.EasyBuildOptions DEBUG generate_cmd_line adding repository value FileRepository default found.
== 2015-06-09 13:17:14,574 main.EasyBuildOptions DEBUG generate_cmd_line adding repository value FileRepository
== 2015-06-09 13:17:14,574 main.EasyBuildOptions DEBUG generate_cmd_line adding robot value None. None found. not adding to args.
== 2015-06-09 13:17:14,574 main.EasyBuildOptions DEBUG generate_cmd_line adding robot-paths value ['/tools/easybuild.local/easyconfigs', '']. add_flex action, return as pathsep-separated list
== 2015-06-09 13:17:14,574 main.EasyBuildOptions DEBUG generate_cmd_line adding search value None default found.
== 2015-06-09 13:17:14,574 main.EasyBuildOptions DEBUG generate_cmd_line adding search value None. None found. not adding to args.
== 2015-06-09 13:17:14,574 main.EasyBuildOptions DEBUG generate_cmd_line adding search-short value None default found.
== 2015-06-09 13:17:14,574 main.EasyBuildOptions DEBUG generate_cmd_line adding search-short value None. None found. not adding to args.
== 2015-06-09 13:17:14,575 main.EasyBuildOptions DEBUG generate_cmd_line adding sequential value False default found.
== 2015-06-09 13:17:14,575 main.EasyBuildOptions DEBUG generate_cmd_line adding sequential value False. store action found
== 2015-06-09 13:17:14,575 main.EasyBuildOptions DEBUG generate_cmd_line adding set-gid-bit value False default found.
== 2015-06-09 13:17:14,575 main.EasyBuildOptions DEBUG generate_cmd_line adding set-gid-bit value False. store action found
== 2015-06-09 13:17:14,575 main.EasyBuildOptions DEBUG generate_cmd_line adding show-default-configfiles value False default found.
== 2015-06-09 13:17:14,575 main.EasyBuildOptions DEBUG generate_cmd_line adding show-default-configfiles value False. store action found
== 2015-06-09 13:17:14,575 main.EasyBuildOptions DEBUG generate_cmd_line adding show-default-moduleclasses value False default found.
== 2015-06-09 13:17:14,575 main.EasyBuildOptions DEBUG generate_cmd_line adding show-default-moduleclasses value False. store action found
== 2015-06-09 13:17:14,576 main.EasyBuildOptions DEBUG generate_cmd_line adding skip value False default found.
== 2015-06-09 13:17:14,576 main.EasyBuildOptions DEBUG generate_cmd_line adding skip value False. store action found
== 2015-06-09 13:17:14,576 main.EasyBuildOptions DEBUG generate_cmd_line adding skip-test-cases value False default found.
== 2015-06-09 13:17:14,576 main.EasyBuildOptions DEBUG generate_cmd_line adding skip-test-cases value False. store action found
== 2015-06-09 13:17:14,576 main.EasyBuildOptions DEBUG generate_cmd_line adding software value None default found.
== 2015-06-09 13:17:14,576 main.EasyBuildOptions DEBUG generate_cmd_line adding software value None. None found. not adding to args.
== 2015-06-09 13:17:14,576 main.EasyBuildOptions DEBUG generate_cmd_line adding software-name value None default found.
== 2015-06-09 13:17:14,576 main.EasyBuildOptions DEBUG generate_cmd_line adding software-name value None. None found. not adding to args.
== 2015-06-09 13:17:14,577 main.EasyBuildOptions DEBUG generate_cmd_line adding software-version value None default found.
== 2015-06-09 13:17:14,577 main.EasyBuildOptions DEBUG generate_cmd_line adding software-version value None. None found. not adding to args.
== 2015-06-09 13:17:14,577 main.EasyBuildOptions DEBUG generate_cmd_line adding sourcepath value /tools/easybuild/sources
== 2015-06-09 13:17:14,577 main.EasyBuildOptions DEBUG generate_cmd_line adding sticky-bit value False default found.
== 2015-06-09 13:17:14,577 main.EasyBuildOptions DEBUG generate_cmd_line adding sticky-bit value False. store action found
== 2015-06-09 13:17:14,577 main.EasyBuildOptions DEBUG generate_cmd_line adding stop value None. None found. not adding to args.
== 2015-06-09 13:17:14,577 main.EasyBuildOptions DEBUG generate_cmd_line adding strict value warn default found.
== 2015-06-09 13:17:14,577 main.EasyBuildOptions DEBUG generate_cmd_line adding strict value warn
== 2015-06-09 13:17:14,578 main.EasyBuildOptions DEBUG generate_cmd_line adding subdir-modules value modules default found.
== 2015-06-09 13:17:14,578 main.EasyBuildOptions DEBUG generate_cmd_line adding subdir-modules value modules
== 2015-06-09 13:17:14,578 main.EasyBuildOptions DEBUG generate_cmd_line adding subdir-software value software default found.
== 2015-06-09 13:17:14,578 main.EasyBuildOptions DEBUG generate_cmd_line adding subdir-software value software
== 2015-06-09 13:17:14,578 main.EasyBuildOptions DEBUG generate_cmd_line adding suffix-modules-path value all default found.
== 2015-06-09 13:17:14,578 main.EasyBuildOptions DEBUG generate_cmd_line adding suffix-modules-path value all
== 2015-06-09 13:17:14,578 main.EasyBuildOptions DEBUG generate_cmd_line adding test-report-env-filter value None default found.
== 2015-06-09 13:17:14,578 main.EasyBuildOptions DEBUG generate_cmd_line adding test-report-env-filter value None. None found. not adding to args.
== 2015-06-09 13:17:14,578 main.EasyBuildOptions DEBUG generate_cmd_line adding testoutput value None default found.
== 2015-06-09 13:17:14,579 main.EasyBuildOptions DEBUG generate_cmd_line adding testoutput value None. None found. not adding to args.
== 2015-06-09 13:17:14,579 main.EasyBuildOptions DEBUG generate_cmd_line adding tmp-logdir value None default found.
== 2015-06-09 13:17:14,579 main.EasyBuildOptions DEBUG generate_cmd_line adding tmp-logdir value None. None found. not adding to args.
== 2015-06-09 13:17:14,579 main.EasyBuildOptions DEBUG generate_cmd_line adding tmpdir value None default found.
== 2015-06-09 13:17:14,579 main.EasyBuildOptions DEBUG generate_cmd_line adding tmpdir value None. None found. not adding to args.
== 2015-06-09 13:17:14,579 main.EasyBuildOptions DEBUG generate_cmd_line adding toolchain value None default found.
== 2015-06-09 13:17:14,579 main.EasyBuildOptions DEBUG generate_cmd_line adding toolchain value None. None found. not adding to args.
== 2015-06-09 13:17:14,579 main.EasyBuildOptions DEBUG generate_cmd_line adding toolchain-name value None default found.
== 2015-06-09 13:17:14,580 main.EasyBuildOptions DEBUG generate_cmd_line adding toolchain-name value None. None found. not adding to args.
== 2015-06-09 13:17:14,580 main.EasyBuildOptions DEBUG generate_cmd_line adding toolchain-version value None default found.
== 2015-06-09 13:17:14,580 main.EasyBuildOptions DEBUG generate_cmd_line adding toolchain-version value None. None found. not adding to args.
== 2015-06-09 13:17:14,580 main.EasyBuildOptions DEBUG generate_cmd_line adding try-amend value None default found.
== 2015-06-09 13:17:14,580 main.EasyBuildOptions DEBUG generate_cmd_line adding try-amend value None. None found. not adding to args.
== 2015-06-09 13:17:14,580 main.EasyBuildOptions DEBUG generate_cmd_line adding try-software value None default found.
== 2015-06-09 13:17:14,580 main.EasyBuildOptions DEBUG generate_cmd_line adding try-software value None. None found. not adding to args.
== 2015-06-09 13:17:14,580 main.EasyBuildOptions DEBUG generate_cmd_line adding try-software-name value None default found.
== 2015-06-09 13:17:14,580 main.EasyBuildOptions DEBUG generate_cmd_line adding try-software-name value None. None found. not adding to args.
== 2015-06-09 13:17:14,581 main.EasyBuildOptions DEBUG generate_cmd_line adding try-software-version value None default found.
== 2015-06-09 13:17:14,581 main.EasyBuildOptions DEBUG generate_cmd_line adding try-software-version value None. None found. not adding to args.
== 2015-06-09 13:17:14,581 main.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain value None default found.
== 2015-06-09 13:17:14,581 main.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain value None. None found. not adding to args.
== 2015-06-09 13:17:14,581 main.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain-name value None default found.
== 2015-06-09 13:17:14,581 main.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain-name value None. None found. not adding to args.
== 2015-06-09 13:17:14,581 main.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain-version value None default found.
== 2015-06-09 13:17:14,581 main.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain-version value None. None found. not adding to args.
== 2015-06-09 13:17:14,582 main.EasyBuildOptions DEBUG generate_cmd_line adding umask value None default found.
== 2015-06-09 13:17:14,582 main.EasyBuildOptions DEBUG generate_cmd_line adding umask value None. None found. not adding to args.
== 2015-06-09 13:17:14,582 main.EasyBuildOptions DEBUG generate_cmd_line adding unittest-file value None default found.
== 2015-06-09 13:17:14,582 main.EasyBuildOptions DEBUG generate_cmd_line adding unittest-file value None. None found. not adding to args.
== 2015-06-09 13:17:14,582 main.EasyBuildOptions DEBUG generate_cmd_line adding update-modules-tool-cache value False default found.
== 2015-06-09 13:17:14,582 main.EasyBuildOptions DEBUG generate_cmd_line adding update-modules-tool-cache value False. store action found
== 2015-06-09 13:17:14,582 main.EasyBuildOptions DEBUG generate_cmd_line adding upload-test-report value False default found.
== 2015-06-09 13:17:14,582 main.EasyBuildOptions DEBUG generate_cmd_line adding upload-test-report value False. store action found
== 2015-06-09 13:17:14,583 main.EasyBuildOptions DEBUG commandline args ['--disable-allow-modules-tool-mismatch', '--disable-avail-cfgfile-constants', '--disable-avail-easyconfig-constants', '--disable-avail-easyconfig-licenses', '--disable-avail-easyconfig-templates', '--disable-avail-module-naming-schemes', '--disable-avail-modules-tools', '--disable-avail-repositories', '--buildpath=/tools/easybuild/build', '--cleanup-builddir', '--debug', '--disable-dry-run', '--disable-dry-run-short', '--disable-experimental', '--external-modules-metadata=""', '--disable-force', '--disable-hidden', '--ignore-dirs=.git,.svn', '--disable-ignore-osdeps', '--disable-info', '--installpath=/tools/easybuild', '--disable-job', '--disable-list-toolchains', '--logfile-format=easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log', '--disable-logtostdout', '--module-naming-scheme=EasyBuildMNS', '--disable-module-only', '--module-syntax=Tcl', '--moduleclasses="[\'base\', \'bio\', \'cae\', \'chem\', \'compiler\', \'data\', \'debugger\', \'devel\', \'geo\', \'ide\', \'lang\', \'lib\', \'math\', \'mpi\', \'numlib\', \'perf\', \'phys\', \'system\', \'toolchain\', \'tools\', \'vis\']"', '--modules-tool=EnvironmentModulesC', '--prefix=/tools/easybuild', '--disable-pretend', '--disable-quiet', '--disable-recursive-module-unload', '--disable-regtest', '--repository=FileRepository', '--repositorypath=/tools/easybuild/ebfiles_repo', '--robot-paths=/tools/easybuild.local/easyconfigs:', '--disable-sequential', '--disable-set-gid-bit', '--disable-show-default-configfiles', '--disable-show-default-moduleclasses', '--disable-skip', '--disable-skip-test-cases', '--sourcepath=/tools/easybuild/sources', '--disable-sticky-bit', '--strict=warn', '--subdir-modules=modules', '--subdir-software=software', '--suffix-modules-path=all', '--disable-update-modules-tool-cache', '--disable-upload-test-report']
== 2015-06-09 13:17:14,583 main.filetools INFO Command modulecmd found at /usr/bin/modulecmd
== 2015-06-09 13:17:14,583 main.filetools INFO Command modulecmd found at /usr/bin/modulecmd
== 2015-06-09 13:17:14,583 main.EnvironmentModulesC DEBUG Different paths found for module command 'modulecmd' via which/$PATH and $None: modulecmd vs None
== 2015-06-09 13:17:14,584 main.EnvironmentModulesC DEBUG Using command modulecmd
== 2015-06-09 13:17:14,584 main.filetools INFO Command modulecmd found at /usr/bin/modulecmd
== 2015-06-09 13:17:14,584 main.EnvironmentModulesC INFO Full path for module command is /usr/bin/modulecmd, so using it
== 2015-06-09 13:17:14,584 main.EnvironmentModulesC DEBUG $MODULEPATH after set_mod_paths: /tools/easybuild/modules/all:/usr/share/Modules/modulefiles:/etc/modulefiles
== 2015-06-09 13:17:14,584 main.EnvironmentModulesC DEBUG self.mod_paths set based on $MODULEPATH: ['/tools/easybuild/modules/all', '/usr/share/Modules/modulefiles', '/etc/modulefiles']
== 2015-06-09 13:17:14,584 main.config DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /tools/easybuild/modules
== 2015-06-09 13:17:14,584 main.EnvironmentModulesC DEBUG Current MODULEPATH: /tools/easybuild/modules/all:/usr/share/Modules/modulefiles:/etc/modulefiles
== 2015-06-09 13:17:14,585 main.EnvironmentModulesC DEBUG Changing LD_LIBRARY_PATH from '/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib:/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib:/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib:/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib:/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib:/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2:/tools/easybuild/software/GCC/4.7.2/lib64:/tools/easybuild/software/GCC/4.7.2/lib:/tools/easybuild/software/EasyBuild/2.1.1/lib' to '/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib:/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib:/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib:/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib:/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib:/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2:/tools/easybuild/software/GCC/4.7.2/lib64:/tools/easybuild/software/GCC/4.7.2/lib:/tools/easybuild/software/EasyBuild/2.1.1/lib' in environment for module command
== 2015-06-09 13:17:14,585 main.EnvironmentModulesC DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2015-06-09 13:17:14,585 main.EnvironmentModulesC DEBUG Running module command '/usr/bin/modulecmd python unuse /tools/easybuild/modules/all' from /tools/easybuild.local/easyconfigs
== 2015-06-09 13:17:14,594 main.EnvironmentModulesC DEBUG Output of module command '/usr/bin/modulecmd python unuse /tools/easybuild/modules/all': stdout: os.environ['MODULEPATH'] = '/usr/share/Modules/modulefiles:/etc/modulefiles'
; stderr:
== 2015-06-09 13:17:14,594 main.EnvironmentModulesC DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib', '/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib', '/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib', '/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib', '/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib', '/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2', '/tools/easybuild/software/GCC/4.7.2/lib64', '/tools/easybuild/software/GCC/4.7.2/lib', '/tools/easybuild/software/EasyBuild/2.1.1/lib'] to ['/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib', '/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib', '/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib', '/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib', '/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib', '/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2', '/tools/easybuild/software/GCC/4.7.2/lib64', '/tools/easybuild/software/GCC/4.7.2/lib', '/tools/easybuild/software/EasyBuild/2.1.1/lib']
== 2015-06-09 13:17:14,595 main.EnvironmentModulesC DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2015-06-09 13:17:14,595 main.EnvironmentModulesC DEBUG $MODULEPATH after set_mod_paths: /usr/share/Modules/modulefiles:/etc/modulefiles
== 2015-06-09 13:17:14,595 main.filetools DEBUG Not creating existing path /tools/easybuild/modules/all
== 2015-06-09 13:17:14,595 main.EnvironmentModulesC DEBUG Current MODULEPATH: /usr/share/Modules/modulefiles:/etc/modulefiles
== 2015-06-09 13:17:14,596 main.EnvironmentModulesC DEBUG Changing LD_LIBRARY_PATH from '/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib:/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib:/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib:/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib:/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib:/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2:/tools/easybuild/software/GCC/4.7.2/lib64:/tools/easybuild/software/GCC/4.7.2/lib:/tools/easybuild/software/EasyBuild/2.1.1/lib' to '/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib:/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib:/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib:/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib:/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib:/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2:/tools/easybuild/software/GCC/4.7.2/lib64:/tools/easybuild/software/GCC/4.7.2/lib:/tools/easybuild/software/EasyBuild/2.1.1/lib' in environment for module command
== 2015-06-09 13:17:14,596 main.EnvironmentModulesC DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2015-06-09 13:17:14,596 main.EnvironmentModulesC DEBUG Running module command '/usr/bin/modulecmd python use /tools/easybuild/modules/all' from /tools/easybuild.local/easyconfigs
== 2015-06-09 13:17:14,605 main.EnvironmentModulesC DEBUG Output of module command '/usr/bin/modulecmd python use /tools/easybuild/modules/all': stdout: os.environ['MODULEPATH'] = '/tools/easybuild/modules/all:/usr/share/Modules/modulefiles:/etc/modulefiles'
; stderr:
== 2015-06-09 13:17:14,606 main.EnvironmentModulesC DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib', '/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib', '/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib', '/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib', '/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib', '/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2', '/tools/easybuild/software/GCC/4.7.2/lib64', '/tools/easybuild/software/GCC/4.7.2/lib', '/tools/easybuild/software/EasyBuild/2.1.1/lib'] to ['/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib', '/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib', '/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib', '/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib', '/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib', '/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2', '/tools/easybuild/software/GCC/4.7.2/lib64', '/tools/easybuild/software/GCC/4.7.2/lib', '/tools/easybuild/software/EasyBuild/2.1.1/lib']
== 2015-06-09 13:17:14,606 main.EnvironmentModulesC DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2015-06-09 13:17:14,607 main.EnvironmentModulesC DEBUG $MODULEPATH after set_mod_paths: /tools/easybuild/modules/all:/usr/share/Modules/modulefiles:/etc/modulefiles
== 2015-06-09 13:17:14,607 main.EnvironmentModulesC INFO Prepended list of module paths with path used by EasyBuild: /tools/easybuild/modules/all
== 2015-06-09 13:17:14,608 main.filetools DEBUG Not creating existing path /etc/modulefiles
== 2015-06-09 13:17:14,608 main.EnvironmentModulesC DEBUG Current MODULEPATH: /tools/easybuild/modules/all:/usr/share/Modules/modulefiles:/etc/modulefiles
== 2015-06-09 13:17:14,609 main.EnvironmentModulesC DEBUG Changing LD_LIBRARY_PATH from '/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib:/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib:/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib:/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib:/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib:/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2:/tools/easybuild/software/GCC/4.7.2/lib64:/tools/easybuild/software/GCC/4.7.2/lib:/tools/easybuild/software/EasyBuild/2.1.1/lib' to '/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib:/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib:/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib:/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib:/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib:/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2:/tools/easybuild/software/GCC/4.7.2/lib64:/tools/easybuild/software/GCC/4.7.2/lib:/tools/easybuild/software/EasyBuild/2.1.1/lib' in environment for module command
== 2015-06-09 13:17:14,609 main.EnvironmentModulesC DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2015-06-09 13:17:14,610 main.EnvironmentModulesC DEBUG Running module command '/usr/bin/modulecmd python use /etc/modulefiles' from /tools/easybuild.local/easyconfigs
== 2015-06-09 13:17:14,621 main.EnvironmentModulesC DEBUG Output of module command '/usr/bin/modulecmd python use /etc/modulefiles': stdout: ; stderr:
== 2015-06-09 13:17:14,622 main.EnvironmentModulesC DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib', '/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib', '/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib', '/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib', '/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib', '/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2', '/tools/easybuild/software/GCC/4.7.2/lib64', '/tools/easybuild/software/GCC/4.7.2/lib', '/tools/easybuild/software/EasyBuild/2.1.1/lib'] to ['/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib', '/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib', '/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib', '/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib', '/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib', '/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2', '/tools/easybuild/software/GCC/4.7.2/lib64', '/tools/easybuild/software/GCC/4.7.2/lib', '/tools/easybuild/software/EasyBuild/2.1.1/lib']
== 2015-06-09 13:17:14,622 main.EnvironmentModulesC DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2015-06-09 13:17:14,623 main.filetools DEBUG Not creating existing path /usr/share/Modules/modulefiles
== 2015-06-09 13:17:14,623 main.EnvironmentModulesC DEBUG Current MODULEPATH: /tools/easybuild/modules/all:/usr/share/Modules/modulefiles:/etc/modulefiles
== 2015-06-09 13:17:14,624 main.EnvironmentModulesC DEBUG Changing LD_LIBRARY_PATH from '/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib:/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib:/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib:/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib:/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib:/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2:/tools/easybuild/software/GCC/4.7.2/lib64:/tools/easybuild/software/GCC/4.7.2/lib:/tools/easybuild/software/EasyBuild/2.1.1/lib' to '/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib:/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib:/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib:/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib:/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib:/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2:/tools/easybuild/software/GCC/4.7.2/lib64:/tools/easybuild/software/GCC/4.7.2/lib:/tools/easybuild/software/EasyBuild/2.1.1/lib' in environment for module command
== 2015-06-09 13:17:14,624 main.EnvironmentModulesC DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2015-06-09 13:17:14,624 main.EnvironmentModulesC DEBUG Running module command '/usr/bin/modulecmd python use /usr/share/Modules/modulefiles' from /tools/easybuild.local/easyconfigs
== 2015-06-09 13:17:14,632 main.EnvironmentModulesC DEBUG Output of module command '/usr/bin/modulecmd python use /usr/share/Modules/modulefiles': stdout: ; stderr:
== 2015-06-09 13:17:14,633 main.EnvironmentModulesC DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib', '/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib', '/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib', '/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib', '/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib', '/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2', '/tools/easybuild/software/GCC/4.7.2/lib64', '/tools/easybuild/software/GCC/4.7.2/lib', '/tools/easybuild/software/EasyBuild/2.1.1/lib'] to ['/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib', '/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib', '/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib', '/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib', '/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib', '/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2', '/tools/easybuild/software/GCC/4.7.2/lib64', '/tools/easybuild/software/GCC/4.7.2/lib', '/tools/easybuild/software/EasyBuild/2.1.1/lib']
== 2015-06-09 13:17:14,633 main.EnvironmentModulesC DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2015-06-09 13:17:14,633 main.filetools DEBUG Not creating existing path /tools/easybuild/modules/all
== 2015-06-09 13:17:14,634 main.EnvironmentModulesC DEBUG Current MODULEPATH: /tools/easybuild/modules/all:/usr/share/Modules/modulefiles:/etc/modulefiles
== 2015-06-09 13:17:14,634 main.EnvironmentModulesC DEBUG Changing LD_LIBRARY_PATH from '/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib:/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib:/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib:/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib:/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib:/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2:/tools/easybuild/software/GCC/4.7.2/lib64:/tools/easybuild/software/GCC/4.7.2/lib:/tools/easybuild/software/EasyBuild/2.1.1/lib' to '/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib:/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib:/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib:/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib:/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib:/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2:/tools/easybuild/software/GCC/4.7.2/lib64:/tools/easybuild/software/GCC/4.7.2/lib:/tools/easybuild/software/EasyBuild/2.1.1/lib' in environment for module command
== 2015-06-09 13:17:14,634 main.EnvironmentModulesC DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2015-06-09 13:17:14,635 main.EnvironmentModulesC DEBUG Running module command '/usr/bin/modulecmd python use /tools/easybuild/modules/all' from /tools/easybuild.local/easyconfigs
== 2015-06-09 13:17:14,642 main.EnvironmentModulesC DEBUG Output of module command '/usr/bin/modulecmd python use /tools/easybuild/modules/all': stdout: ; stderr:
== 2015-06-09 13:17:14,643 main.EnvironmentModulesC DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib', '/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib', '/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib', '/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib', '/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib', '/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2', '/tools/easybuild/software/GCC/4.7.2/lib64', '/tools/easybuild/software/GCC/4.7.2/lib', '/tools/easybuild/software/EasyBuild/2.1.1/lib'] to ['/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib', '/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib', '/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib', '/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib', '/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib', '/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2', '/tools/easybuild/software/GCC/4.7.2/lib64', '/tools/easybuild/software/GCC/4.7.2/lib', '/tools/easybuild/software/EasyBuild/2.1.1/lib']
== 2015-06-09 13:17:14,643 main.EnvironmentModulesC DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2015-06-09 13:17:14,643 main.EnvironmentModulesC INFO $MODULEPATH set based on list of module paths (via 'module use'): /tools/easybuild/modules/all:/usr/share/Modules/modulefiles:/etc/modulefiles
== 2015-06-09 13:17:14,644 main.run DEBUG run_cmd: running cmd type module (in /tools/easybuild.local/easyconfigs)
== 2015-06-09 13:17:14,679 main.run DEBUG cmd "type module" exited with exitcode 0 and output:
module is a function
module ()
{
eval `/usr/bin/modulecmd bash $*`
}
== 2015-06-09 13:17:14,680 main.run DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2015-06-09 13:17:14,681 main.EnvironmentModulesC DEBUG Found pattern '.*modulecmd' in defined 'module' function.
== 2015-06-09 13:17:14,681 main.EnvironmentModulesC DEBUG Current MODULEPATH: /tools/easybuild/modules/all:/usr/share/Modules/modulefiles:/etc/modulefiles
== 2015-06-09 13:17:14,682 main.EnvironmentModulesC DEBUG Changing LD_LIBRARY_PATH from '/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib:/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib:/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib:/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib:/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib:/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2:/tools/easybuild/software/GCC/4.7.2/lib64:/tools/easybuild/software/GCC/4.7.2/lib:/tools/easybuild/software/EasyBuild/2.1.1/lib' to '/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib:/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib:/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib:/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib:/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib:/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2:/tools/easybuild/software/GCC/4.7.2/lib64:/tools/easybuild/software/GCC/4.7.2/lib:/tools/easybuild/software/EasyBuild/2.1.1/lib' in environment for module command
== 2015-06-09 13:17:14,682 main.EnvironmentModulesC DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2015-06-09 13:17:14,682 main.EnvironmentModulesC DEBUG Running module command '/usr/bin/modulecmd python --version' from /tools/easybuild.local/easyconfigs
== 2015-06-09 13:17:14,690 main.EnvironmentModulesC DEBUG Output of module command '/usr/bin/modulecmd python --version': stdout: ; stderr: VERSION=3.2.10
DATE=2012-12-21
AUTOLOADPATH=undef
BASEPREFIX="/usr/share"
BEGINENV=99
CACHE_AVAIL=undef
DEF_COLLATE_BY_NUMBER=undef
DOT_EXT=""
EVAL_ALIAS=1
HAS_BOURNE_FUNCS=1
HAS_BOURNE_ALIAS=1
HAS_TCLXLIBS=undef
HAS_X11LIBS=1
LMSPLIT_SIZE=1000
MODULEPATH="/etc/modulefiles"
MODULES_INIT_DIR="/usr/share/Modules/init"
PREFIX="/usr/share/Modules"
TCL_VERSION="8.5"
TCL_PATCH_LEVEL="8.5.13"
TMP_DIR="/tmp"
USE_FREE=undef
VERSION_MAGIC=1
VERSIONPATH=undef
WANTS_VERSIONING=0
WITH_DEBUG_INFO=undef
== 2015-06-09 13:17:14,691 main.EnvironmentModulesC INFO Found version 3.2.10
== 2015-06-09 13:17:14,692 main.EnvironmentModulesC INFO Converted actual version to '3.2.10'
== 2015-06-09 13:17:14,692 main.EnvironmentModulesC DEBUG Version 3.2.10 matches requirement 3.2.10
== 2015-06-09 13:17:14,692 main.EnvironmentModulesC DEBUG Current MODULEPATH: /tools/easybuild/modules/all:/usr/share/Modules/modulefiles:/etc/modulefiles
== 2015-06-09 13:17:14,693 main.EnvironmentModulesC DEBUG Changing LD_LIBRARY_PATH from '/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib:/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib:/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib:/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib:/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib:/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2:/tools/easybuild/software/GCC/4.7.2/lib64:/tools/easybuild/software/GCC/4.7.2/lib:/tools/easybuild/software/EasyBuild/2.1.1/lib' to '/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib:/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib:/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib:/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib:/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib:/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2:/tools/easybuild/software/GCC/4.7.2/lib64:/tools/easybuild/software/GCC/4.7.2/lib:/tools/easybuild/software/EasyBuild/2.1.1/lib' in environment for module command
== 2015-06-09 13:17:14,693 main.EnvironmentModulesC DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2015-06-09 13:17:14,693 main.EnvironmentModulesC DEBUG Running module command '/usr/bin/modulecmd python --terse list' from /tools/easybuild.local/easyconfigs
== 2015-06-09 13:17:14,701 main.EnvironmentModulesC DEBUG Output of module command '/usr/bin/modulecmd python --terse list': stdout: ; stderr: Currently Loaded Modulefiles:
EasyBuild/2.1.1
GCC/4.7.2
hwloc/1.6.2-GCC-4.7.2
OpenMPI/1.6.4-GCC-4.7.2
gompi/1.4.10
OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2
FFTW/3.3.3-gompi-1.4.10
ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2
goolf/1.4.10
samblaster/v.0.1.21-goolf-1.4.10
== 2015-06-09 13:17:14,701 main.EnvironmentModulesC DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib', '/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib', '/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib', '/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib', '/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib', '/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2', '/tools/easybuild/software/GCC/4.7.2/lib64', '/tools/easybuild/software/GCC/4.7.2/lib', '/tools/easybuild/software/EasyBuild/2.1.1/lib'] to ['/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib', '/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib', '/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib', '/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib', '/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib', '/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2', '/tools/easybuild/software/GCC/4.7.2/lib64', '/tools/easybuild/software/GCC/4.7.2/lib', '/tools/easybuild/software/EasyBuild/2.1.1/lib']
== 2015-06-09 13:17:14,702 main.EnvironmentModulesC DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2015-06-09 13:17:14,702 main DEBUG Initial session state: {'environment': {'EBDEVELGCC': '/tools/easybuild/software/GCC/4.7.2/easybuild/GCC-4.7.2-easybuild-devel', 'HOSTNAME': 'bb7b103a5bd5', 'EBDEVELGOOLF': '/tools/easybuild/software/goolf/1.4.10/easybuild/goolf-1.4.10-easybuild-devel', 'http_proxy': 'http://proxy.charite.de:8080', 'EBVERSIONOPENBLAS': '0.2.6', 'EBDEVELEASYBUILD': '/tools/easybuild/software/EasyBuild/2.1.1/easybuild/EasyBuild-2.1.1-easybuild-devel', 'LESSOPEN': '||/usr/bin/lesspipe.sh %s', 'EBVERSIONHWLOC': '1.6.2', 'EBDEVELOPENBLAS': '/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/easybuild/OpenBLAS-0.2.6-gompi-1.4.10-LAPACK-3.4.2-easybuild-devel', 'CPATH': '/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include:/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/include:/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include:/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/include:/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/include:/tools/easybuild/software/GCC/4.7.2/include', 'USER': 'ostolpe', 'HOME': '/home/buildmaster', 'PATH': '/tools/easybuild/software/samblaster/v.0.1.21-goolf-1.4.10/bin:/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/bin:/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/bin:/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/bin:/tools/easybuild/software/GCC/4.7.2/bin:/tools/easybuild/software/EasyBuild/2.1.1/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin', 'CFGS_LOCAL': '/tools/easybuild.local/easyconfigs', 'LD_LIBRARY_PATH': '/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib:/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib:/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib:/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib:/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib:/tools/easybuild/software/GCC/4.7.2/lib/gcc/x86_64-unknown-linux-gnu/4.7.2:/tools/easybuild/software/GCC/4.7.2/lib64:/tools/easybuild/software/GCC/4.7.2/lib:/tools/easybuild/software/EasyBuild/2.1.1/lib', 'EBROOTOPENBLAS': '/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2', 'TERM': 'xterm', 'EBVERSIONGOMPI': '1.4.10', 'EBROOTSCALAPACK': '/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2', 'SHLVL': '2', 'EBDEVELOPENMPI': '/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/easybuild/OpenMPI-1.6.4-GCC-4.7.2-easybuild-devel', 'EBDEVELSCALAPACK': '/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/easybuild/ScaLAPACK-2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2-easybuild-devel', 'EBDEVELFFTW': '/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/easybuild/FFTW-3.3.3-gompi-1.4.10-easybuild-devel', 'EBROOTOPENMPI': '/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2', 'EBROOTSAMBLASTER': '/tools/easybuild/software/samblaster/v.0.1.21-goolf-1.4.10', 'https_proxy': 'http://proxy.charite.de:8080', 'EBROOTGOOLF': '/tools/easybuild/software/goolf/1.4.10', 'EBVERSIONSCALAPACK': '2.0.2', 'EBDEVELSAMBLASTER': '/tools/easybuild/software/samblaster/v.0.1.21-goolf-1.4.10/easybuild/samblaster-v.0.1.21-goolf-1.4.10-easybuild-devel', 'EBROOTGCC': '/tools/easybuild/software/GCC/4.7.2', 'MODULEPATH': '/tools/easybuild/modules/all:/usr/share/Modules/modulefiles:/etc/modulefiles', 'EBDEVELGOMPI': '/tools/easybuild/software/gompi/1.4.10/easybuild/gompi-1.4.10-easybuild-devel', 'EBROOTHWLOC': '/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2', 'MANPATH': '/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/share/man:/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/share/man:/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/share/man:/tools/easybuild/software/GCC/4.7.2/share/man:/usr/share/man:/usr/local/share/man', 'EBROOTFFTW': '/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10', 'PYTHONPATH': '/tools/easybuild/software/EasyBuild/2.1.1/lib/python2.7/site-packages:/tools/easybuild.local/easybuild/easyblocks:/tools/easybuild.local:/tools/easybuild.local/easybuild/', 'EBDEVELHWLOC': '/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/easybuild/hwloc-1.6.2-GCC-4.7.2-easybuild-devel', 'EBVERSIONOPENMPI': '1.6.4', 'EBROOTEASYBUILD': '/tools/easybuild/software/EasyBuild/2.1.1', 'PKG_CONFIG_PATH': '/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib/pkgconfig:/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib/pkgconfig:/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib/pkgconfig', 'BASH_FUNC_module()': '() { eval `/usr/bin/modulecmd bash $*`\n}', 'EBVERSIONSAMBLASTER': 'v.0.1.21', 'EBVERSIONEASYBUILD': '2.1.1', '_': '/usr/bin/python', 'LIBRARY_PATH': '/tools/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib:/tools/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib:/tools/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib:/tools/easybuild/software/OpenMPI/1.6.4-GCC-4.7.2/lib:/tools/easybuild/software/hwloc/1.6.2-GCC-4.7.2/lib:/tools/easybuild/software/GCC/4.7.2/lib64:/tools/easybuild/software/GCC/4.7.2/lib:/tools/easybuild/software/EasyBuild/2.1.1/lib', 'LS_COLORS': 'rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36:', 'EBVERSIONFFTW': '3.3.3', 'LOADEDMODULES': 'EasyBuild/2.1.1:GCC/4.7.2:hwloc/1.6.2-GCC-4.7.2:OpenMPI/1.6.4-GCC-4.7.2:gompi/1.4.10:OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2:FFTW/3.3.3-gompi-1.4.10:ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2:goolf/1.4.10:samblaster/v.0.1.21-goolf-1.4.10', 'USERID': '', 'EBROOTGOMPI': '/tools/easybuild/software/gompi/1.4.10', 'MODULESHOME': '/usr/share/Modules', 'HTTPS_PROXY': 'http://proxy.charite.de:8080', 'PWD': '/tools/easybuild.local/easyconfigs', 'EBVERSIONGCC': '4.7.2', 'EBVERSIONGOOLF': '1.4.10', 'HTTP_PROXY': 'http://proxy.charite.de:8080', '_LMFILES_': '/tools/easybuild/modules/all/EasyBuild/2.1.1:/tools/easybuild/modules/all/GCC/4.7.2:/tools/easybuild/modules/all/hwloc/1.6.2-GCC-4.7.2:/tools/easybuild/modules/all/OpenMPI/1.6.4-GCC-4.7.2:/tools/easybuild/modules/all/gompi/1.4.10:/tools/easybuild/modules/all/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2:/tools/easybuild/modules/all/FFTW/3.3.3-gompi-1.4.10:/tools/easybuild/modules/all/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2:/tools/easybuild/modules/all/goolf/1.4.10:/tools/easybuild/modules/all/samblaster/v.0.1.21-goolf-1.4.10'}, 'module_list': [{'default': None, 'mod_name': 'EasyBuild/2.1.1'}, {'default': None, 'mod_name': 'GCC/4.7.2'}, {'default': None, 'mod_name': 'hwloc/1.6.2-GCC-4.7.2'}, {'default': None, 'mod_name': 'OpenMPI/1.6.4-GCC-4.7.2'}, {'default': None, 'mod_name': 'gompi/1.4.10'}, {'default': None, 'mod_name': 'OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2'}, {'default': None, 'mod_name': 'FFTW/3.3.3-gompi-1.4.10'}, {'default': None, 'mod_name': 'ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2'}, {'default': None, 'mod_name': 'goolf/1.4.10'}, {'default': None, 'mod_name': 'samblaster/v.0.1.21-goolf-1.4.10'}], 'system_info': {'glibc_version': '2.17', 'python_version': '2.7.5 (default, Jun 17 2014, 18:11:42) ; [GCC 4.8.2 20140120 (Red Hat 4.8.2-16)]', 'cpu_model': 'Intel(R) Xeon(R) CPU E5-1620 v2 @ 3.70GHz', 'system_gcc_path': '/tools/easybuild/software/GCC/4.7.2/bin/gcc', 'os_name': 'centos linux', 'cpu_speed': 3701.0, 'cpu_vendor': 'Intel', 'core_count': 8, 'gcc_version': 'Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/tools/easybuild/software/GCC/4.7.2/libexec/gcc/x86_64-unknown-linux-gnu/4.7.2/lto-wrapper; Target: x86_64-unknown-linux-gnu; Configured with: ../configure --enable-languages=c,c++,fortran --enable-lto --enable-checking=release --disable-multilib --enable-shared=yes --enable-static=yes --enable-threads=posix --enable-gold=default --enable-plugins --enable-ld --with-plugin-ld=ld.gold --enable-bootstrap --prefix=/tools/easybuild/software/GCC/4.7.2 --with-local-prefix=/tools/easybuild/software/GCC/4.7.2; Thread model: posix; gcc version 4.7.2 (GCC) ; ', 'hostname': 'bb7b103a5bd5', 'platform_name': 'x86_64-unknown-linux', 'os_version': '7.1.1503', 'system_python_path': '/usr/bin/python', 'os_type': 'Linux'}, 'easybuild_configuration': ['--disable-allow-modules-tool-mismatch', '--disable-avail-cfgfile-constants', '--disable-avail-easyconfig-constants', '--disable-avail-easyconfig-licenses', '--disable-avail-easyconfig-templates', '--disable-avail-module-naming-schemes', '--disable-avail-modules-tools', '--disable-avail-repositories', '--buildpath=/tools/easybuild/build', '--cleanup-builddir', '--debug', '--disable-dry-run', '--disable-dry-run-short', '--disable-experimental', '--external-modules-metadata=""', '--disable-force', '--disable-hidden', '--ignore-dirs=.git,.svn', '--disable-ignore-osdeps', '--disable-info', '--installpath=/tools/easybuild', '--disable-job', '--disable-list-toolchains', '--logfile-format=easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log', '--disable-logtostdout', '--module-naming-scheme=EasyBuildMNS', '--disable-module-only', '--module-syntax=Tcl', '--moduleclasses="[\'base\', \'bio\', \'cae\', \'chem\', \'compiler\', \'data\', \'debugger\', \'devel\', \'geo\', \'ide\', \'lang\', \'lib\', \'math\', \'mpi\', \'numlib\', \'perf\', \'phys\', \'system\', \'toolchain\', \'tools\', \'vis\']"', '--modules-tool=EnvironmentModulesC', '--prefix=/tools/easybuild', '--disable-pretend', '--disable-quiet', '--disable-recursive-module-unload', '--disable-regtest', '--repository=FileRepository', '--repositorypath=/tools/easybuild/ebfiles_repo', '--robot-paths=/tools/easybuild.local/easyconfigs:', '--disable-sequential', '--disable-set-gid-bit', '--disable-show-default-configfiles', '--disable-show-default-moduleclasses', '--disable-skip', '--disable-skip-test-cases', '--sourcepath=/tools/easybuild/sources', '--disable-sticky-bit', '--strict=warn', '--subdir-modules=modules', '--subdir-software=software', '--suffix-modules-path=all', '--disable-update-modules-tool-cache', '--disable-upload-test-report'], 'time': time.struct_time(tm_year=2015, tm_mon=6, tm_mday=9, tm_hour=13, tm_min=17, tm_sec=14, tm_wday=1, tm_yday=160, tm_isdst=0)}
== 2015-06-09 13:17:14,703 main.filetools INFO Command eb found at /tools/easybuild/software/EasyBuild/2.1.1/bin/eb
== 2015-06-09 13:17:14,704 main.easyconfig.tools DEBUG Also considering installation prefix /tools/easybuild/software/EasyBuild/2.1.1...
== 2015-06-09 13:17:14,704 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tools/easybuild/software/EasyBuild/2.1.1/lib/python2.7/site-packages/easybuild_framework-2.1.1-py2.7.egg/easybuild/easybuild/easyconfigs
== 2015-06-09 13:17:14,704 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tools/easybuild/software/EasyBuild/2.1.1/lib/python2.7/site-packages/vsc_base-2.2.2-py2.7.egg/easybuild/easyconfigs
== 2015-06-09 13:17:14,704 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tools/easybuild/software/EasyBuild/2.1.1/lib/python2.7/site-packages/easybuild_framework-2.1.1-py2.7.egg/easybuild/easyconfigs
== 2015-06-09 13:17:14,704 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tools/easybuild/software/EasyBuild/2.1.1/lib/python2.7/site-packages/easybuild_easyblocks-2.1.1-py2.7.egg/easybuild/easyconfigs
== 2015-06-09 13:17:14,704 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tools/easybuild/software/EasyBuild/2.1.1/lib/python2.7/site-packages/easybuild_easyconfigs-2.1.1-py2.7.egg/easybuild/easyconfigs
== 2015-06-09 13:17:14,704 main.easyconfig.tools DEBUG Added /tools/easybuild/software/EasyBuild/2.1.1/lib/python2.7/site-packages/easybuild_easyconfigs-2.1.1-py2.7.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
== 2015-06-09 13:17:14,704 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tools/easybuild/software/EasyBuild/2.1.1/lib/python2.7/site-packages/easybuild/easyconfigs
== 2015-06-09 13:17:14,705 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tools/easybuild.local/easybuild/easyblocks/easybuild/easyconfigs
== 2015-06-09 13:17:14,705 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tools/easybuild.local/easybuild/easyconfigs
== 2015-06-09 13:17:14,705 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tools/easybuild.local/easybuild/easybuild/easyconfigs
== 2015-06-09 13:17:14,705 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python27.zip/easybuild/easyconfigs
== 2015-06-09 13:17:14,705 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/easybuild/easyconfigs
== 2015-06-09 13:17:14,705 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/plat-linux2/easybuild/easyconfigs
== 2015-06-09 13:17:14,705 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-tk/easybuild/easyconfigs
== 2015-06-09 13:17:14,706 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-old/easybuild/easyconfigs
== 2015-06-09 13:17:14,706 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-dynload/easybuild/easyconfigs
== 2015-06-09 13:17:14,706 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/easybuild/easyconfigs
== 2015-06-09 13:17:14,706 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/easybuild/easyconfigs
== 2015-06-09 13:17:14,706 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at ../easybuild/easyconfigs
== 2015-06-09 13:17:14,706 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib/graphviz/python/easybuild/easyconfigs
== 2015-06-09 13:17:14,706 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/graphviz/python/easybuild/easyconfigs
== 2015-06-09 13:17:14,706 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tools/easybuild/software/EasyBuild/2.1.1/easybuild/easyconfigs
== 2015-06-09 13:17:14,707 main.easyconfig.tools DEBUG List of easyconfig files to find: [(0, 'FastQC-0.11.3.eb')]
== 2015-06-09 13:17:14,707 main.easyconfig.tools DEBUG Looking for missing easyconfig files (1 left) in /tools/easybuild.local/easyconfigs...
== 2015-06-09 13:17:14,707 main.easyconfig.tools INFO Found FastQC-0.11.3.eb in /tools/easybuild.local/easyconfigs: /tools/easybuild.local/easyconfigs/f/FastQC/FastQC-0.11.3.eb
== 2015-06-09 13:17:14,707 main DEBUG Paths: [('/tools/easybuild.local/easyconfigs/f/FastQC/FastQC-0.11.3.eb', False)]
== 2015-06-09 13:17:14,708 main.easyconfig.format.one DEBUG retrieve_blocks_in_spec: derived easyconfig format version: 1.0
== 2015-06-09 13:17:14,708 main.easyconfig.easyconfig DEBUG Processing easyconfig /tools/easybuild.local/easyconfigs/f/FastQC/FastQC-0.11.3.eb
== 2015-06-09 13:17:14,709 main.EasyConfig DEBUG Raw contents from supplied easyconfig file /tools/easybuild.local/easyconfigs/f/FastQC/FastQC-0.11.3.eb: name = 'FastQC'
version = '0.11.3'
homepage = 'http://www.bioinformatics.babraham.ac.uk/projects/fastqc'
description = """FastQC aims to provide a simple way to do some quality control
checks on raw sequence data coming from high throughput sequencing pipelines.
It provides a modular set of analyses which you can use to give a quick
impression of whether your data has any problems of which you should be aware
before doing any further analysis."""
toolchain = {'name': 'dummy', 'version': 'dummy'}
source_urls = ['http://www.bioinformatics.babraham.ac.uk/projects/fastqc']
sources = ['%(namelower)s_v%(version)s.zip']
postinstallcmds = ['chmod 755 fastqc']
#files_to_copy = [(['fastqc', 'jbzip2-0.9.jar', 'sam-1.103.jar', 'cisd-jhdf5.jar', 'net', 'org', 'uk', 'Configuration', 'Help', 'Templates'], bin)]
java = 'Java'
javaver = '1.7.0_80'
versionsuffix = '-%s-%s' % (java, javaver)
dependencies = [(java, javaver)]
#sanity_check_paths = {
# 'files': ['bin/fastqc', 'bin/jbzip2-0.9.jar', 'bin/sam-1.103.jar', 'bin/cisd-jhdf5.jar', 'bin/LICENSE.txt', 'bin/LICENSE_JHDF5.txt', 'bin/README.txt', 'bin/RELEASE_NOTES.txt'],
# 'dirs': ['bin/net', 'bin/org', 'bin/uk', 'bin/Configuration', 'bin/Help', 'bin/Templates'],
#}
moduleclass = 'bio'
== 2015-06-09 13:17:14,709 main.EasyConfig INFO Obtained list of valid module classes: ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis']
== 2015-06-09 13:17:14,710 main.easyconfig.parser DEBUG Obtained parameters value for ['name', 'easyblock']: ['FastQC', None]
== 2015-06-09 13:17:14,712 main.easyconfig.easyconfig DEBUG Failed to import module 'easybuild.easyblocks.fastqc': No module named fastqc
== 2015-06-09 13:17:14,713 main.easyconfig.easyconfig DEBUG No module path 'easybuild.easyblocks.fastqc' found
== 2015-06-09 13:17:14,713 main.easyconfig.easyconfig DEBUG Module path determined based on software name: easybuild.easyblocks.fastqc
== 2015-06-09 13:17:14,713 main.easyconfig.easyconfig DEBUG getting class for easybuild.easyblocks.fastqc.EB_FastQC
== 2015-06-09 13:17:14,713 main.easyconfig.easyconfig DEBUG error regexp: No module named fastqc
== 2015-06-09 13:17:14,715 main.easyconfig.easyconfig ERROR NO LONGER SUPPORTED since v2.0: Fallback to default easyblock ConfigureMake (from easybuild.easyblocks.generic.configuremake); use "easyblock = 'ConfigureMake'" in easyconfig file?; see http://easybuild.readthedocs.org/en/latest/Deprecated-functionality.html for more information (at easybuild/software/EasyBuild/2.1.1/lib/python2.7/site-packages/easybuild_framework-2.1.1-py2.7.egg/easybuild/tools/build_log.py:124 in nosupport)
== 2015-06-09 13:17:14,715 main ERROR Failed to process easyconfig /tools/easybuild.local/easyconfigs/f/FastQC/FastQC-0.11.3.eb: NO LONGER SUPPORTED since v2.0: Fallback to default easyblock ConfigureMake (from easybuild.easyblocks.generic.configuremake); use "easyblock = 'ConfigureMake'" in easyconfig file?; see http://easybuild.readthedocs.org/en/latest/Deprecated-functionality.html for more information (at easybuild/software/EasyBuild/2.1.1/lib/python2.7/site-packages/easybuild_framework-2.1.1-py2.7.egg/easybuild/framework/easyconfig/easyconfig.py:941 in process_easyconfig)
FastQC-0.11.3.eb
Description: FastQC-0.11.3.eb
## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2013-2015 CaSToRC, The Cyprus Institute # Authors:: George Tsouloupas <[email protected]> # License:: MIT/GPL # $Id$ # ## """ Easybuild support for building FastQC @author: George Tsouloupas (Cyprus Institute) @author: Kenneth Hoste (Ghent University) """ import glob import os import re import shutil from distutils.version import LooseVersion import easybuild.tools.toolchain as toolchain from easybuild.easyblocks.generic.tarball import Tarball from easybuild.framework.easyconfig import CUSTOM, MANDATORY from easybuild.tools.build_log import EasyBuildError from easybuild.tools.filetools import extract_file from easybuild.tools.modules import get_software_root, get_software_version from easybuild.tools.run import run_cmd class EB_FastQC(Tarball): def __init__(self, *args, **kwargs): super(EB_FastQC, self).__init__(*args, **kwargs) self.files = [] def install_step(self): """Install by copying the correct directory to the install dir""" srcdir = self.cfg['start_dir'] destdir = os.path.join(self.installdir, 'bin') srcfile = None try: shutil.copytree(srcdir, destdir) except OSError, err: raise EasyBuildError("Copying %s to installation dir %s failed: %s", srcfile, destdir, err) def sanity_check_step(self): """Custom sanity check for FastQC.""" custom_paths = { 'files': ['bin/fastqc', 'bin/jbzip2-0.9.jar', 'bin/sam-1.103.jar', 'bin/cisd-jhdf5.jar', 'bin/LICENSE.txt', 'bin/LICENSE_JHDF5.txt', 'bin/README.txt', 'bin/RELEASE_NOTES.txt'], 'dirs': ['bin/net', 'bin/org', 'bin/uk', 'bin/Configuration', 'bin/Help', 'bin/Templates'], } super(EB_FastQC, self).sanity_check_step(custom_paths=custom_paths)
