Hi Oliver,
The name of the module file should be lowercase, i.e. fastqc.py.
Can you try that?
regards,
Kenneth
On 09/06/15 15:44, Stolpe, Oliver wrote:
Hello Kenneth,
please find the requested files attached! I also attached the recipy. In the
log file I found these lines suspicious:
== 2015-06-09 13:17:14,712 main.easyconfig.easyconfig DEBUG Failed to import
module 'easybuild.easyblocks.fastqc': No module named fastqc
== 2015-06-09 13:17:14,713 main.easyconfig.easyconfig DEBUG No module path
'easybuild.easyblocks.fastqc' found
== 2015-06-09 13:17:14,713 main.easyconfig.easyconfig DEBUG Module path
determined based on software name: easybuild.easyblocks.fastqc
== 2015-06-09 13:17:14,713 main.easyconfig.easyconfig DEBUG getting class for
easybuild.easyblocks.fastqc.EB_FastQC
== 2015-06-09 13:17:14,713 main.easyconfig.easyconfig DEBUG error regexp: No
module named fastqc
Cheers,
Oliver
________________________________________
From: [email protected] [[email protected]] on
behalf of Kenneth Hoste [[email protected]]
Sent: Tuesday, June 09, 2015 3:08 PM
To: [email protected]
Subject: Re: [easybuild] Setting up own easyblock repository
Hi Oliver,
On 09/06/15 14:17, Stolpe, Oliver wrote:
Hello Kenneth and Niek,
thanks for your quick answers!
It wasn't clear to me from the documentation that easybuild directory also
needs __init__.py.
Now I got:
$ find easybuild
easybuild/__init__.py
easybuild/easyblocks
easybuild/easyblocks/__init__.py
easybuild/easyblocks/FastQC.py
easybuild/easyblocks/FastQC.pyc
And:
$ echo $PYTHONPATH
/tools/easybuild/software/EasyBuild/2.1.1/lib/python2.7/site-packages:/tools/easybuild.local/easybuild/easyblocks:/tools/easybuild.local:/tools/easybuild.local/easybuild/
It exists:
$ eb --list-easyblocks | grep -i fastqc
| |-- EB_FastQC
OK, this confirm your easyblock can be found, indeed.
But I keep getting the same error. Any other ideas?
Can we see the full easyconfig file you're using, and maybe also the
full log file (ideally, from a run where --debug was used)?
regards,
Kenneth
Cheers,
Oliver
________________________________________
From: [email protected] [[email protected]] on
behalf of Kenneth Hoste [[email protected]]
Sent: Tuesday, June 09, 2015 1:59 PM
To: [email protected]
Subject: Re: [easybuild] Setting up own easyblock repository
On 09/06/15 13:49, Niek de Klein wrote:
Hello Oliver,
I'm not part of the EasyBuild team but I think I see what goes wrong.
I think you forgot to add the easyblock name. What is the class name
you used in FastQC.py? For example, if in FastQC.py, under the imports
you have
class EB_FastQC(EasyBlock):
...
You should add
easyblock = 'EB_FastQC'
in your FastQC-0.11.3.eb.
If no easyblock specification is given, EasyBuild will try to find the
easyblock that matches the software name.
Assuming the easyconfig file contains "name = 'FastQC' ", EB should be
looking for EB_FastQC by itself.
The error message shown below only mentions that the automagic fallback
to ConfigureMake is no longer there.
Oliver: if the information you've provided is complete, you're missing
an __init__.py file in the 'easybuild' directory too (that includes the
'extend_path' statement mentioned in the documentation.
regards,
Kenneth
Hope this helps,
Niek
On Tue, Jun 9, 2015 at 1:43 PM, Stolpe, Oliver <[email protected]> wrote:
Hello Mailinglist,
I wanted to setup my own EasyBlock repository. I followed the instructions
from
<https://github.com/hpcugent/easybuild/wiki/Setting-up-your-own-easyblocks-repository>.
Somehow it ignores my easyblock when I try to execute the config file. Any
help is appreciated!
Cheers,
Oliver
This is what I got:
/tools/easybuild.local/easybuild/easyblocks
/tools/easybuild.local/easybuild/easyblocks/FastQC.py
/tools/easybuild.local/easybuild/easyblocks/__init__.py
$ echo $PYTHONPATH
/tools/easybuild/software/EasyBuild/2.1.1/lib/python2.7/site-packages:/tools/easybuild.local
$ head FastQC-0.11.3.eb
name = 'FastQC'
version = '0.11.3'
homepage = 'http://www.bioinformatics.babraham.ac.uk/projects/fastqc'
$ eb FastQC-0.11.3.eb
== temporary log file in case of crash /tmp/eb-hJyLxt/easybuild-NGWQ6S.log
ERROR: Failed to process easyconfig
/tools/easybuild.local/easyconfigs/f/FastQC/FastQC-0.11.3.eb: NO LONGER
SUPPORTED since v2.0: Fallback to default easyblock ConfigureMake (from
easybuild.easyblocks.generic.configuremake); use "easyblock =
'ConfigureMake'" in easyconfig file?; see
http://easybuild.readthedocs.org/en/latest/Deprecated-functionality.html for
more information
