EasyBuild error. Package seems to build and test ok. Easybuild fails during
package install
Easyconfig: https://github.com/FredHutch/easybuild-life-sciences ->
fh_easyconfigs -> NiftyNet-0.2.2-foss-2016b-Python-3.6.5-fh1.eb
EasyBuild Version : This is EasyBuild 3.5.3 (framework: 3.5.3, easyblocks:
3.5.3)
== 2018-04-16 11:12:49,498 easyblock.py:2449 INFO Starting build step
== 2018-04-16 11:12:49,499 easyblock.py:2455 INFO Running method build_step
part of step build
== 2018-04-16 11:12:49,499 build_log.py:233 INFO testing...
== 2018-04-16 11:12:49,500 easyblock.py:2449 INFO Starting test step
== 2018-04-16 11:12:49,500 easyblock.py:2455 INFO Running method test_step part
of step test
== 2018-04-16 11:12:49,501 build_log.py:233 INFO installing...
== 2018-04-16 11:12:49,501 easyblock.py:2449 INFO Starting install step
== 2018-04-16 11:12:49,502 easyblock.py:2455 INFO Running method
stage_install_step part of step install
== 2018-04-16 11:12:49,502 easyblock.py:2455 INFO Running method
make_installdir part of step install
== 2018-04-16 11:12:49,502 easyblock.py:881 INFO Found old directory
/home/jfdey/.local/easybuild/software/NiftyNet/0.2.2-foss-2016b-Python-3.6.5-fh1
== 2018-04-16 11:12:49,543 filetools.py:1203 INFO Path
/home/jfdey/.local/easybuild/software/NiftyNet/0.2.2-foss-2016b-Python-3.6.5-fh1
successfully removed.
== 2018-04-16 11:12:49,543 easyblock.py:888 INFO Removed old directory
/home/jfdey/.local/easybuild/software/NiftyNet/0.2.2-foss-2016b-Python-3.6.5-fh1
== 2018-04-16 11:12:49,544 filetools.py:1107 INFO Creating directory
/home/jfdey/.local/easybuild/software/NiftyNet/0.2.2-foss-2016b-Python-3.6.5-fh1
(parents: True, set_gid: False, sticky: False)
== 2018-04-16 11:12:49,545 easyblock.py:2455 INFO Running method install_step
part of step install
== 2018-04-16 11:12:49,546 filetools.py:1107 INFO Creating directory
/home/jfdey/.local/easybuild/software/NiftyNet/0.2.2-foss-2016b-Python-3.6.5-fh1/lib/python3.6/site-packages
(parents: True, set_gid: False, sticky: False)
== 2018-04-16 11:12:49,549 environment.py:97 INFO Environment variable
PYTHONPATH set to
/home/jfdey/.local/easybuild/software/NiftyNet/0.2.2-foss-2016b-Python-3.6.5-fh1/lib/python3.6/site-packages
(previously undefined)
== 2018-04-16 11:12:49,549 run.py:183 INFO running cmd: pip --version
== 2018-04-16 11:12:54,427 pythonpackage.py:331 INFO Found pip version 10.0.0,
OK
== 2018-04-16 11:12:54,592 build_log.py:158 ERROR EasyBuild crashed with an
error (at
easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/vsc/utils/exceptions.py:124
in __init__): Traceback (most recent call last):
File
"/app/easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/easybuild_framework-3.5.3-py2.7.egg/easybuild/main.py",
line 128, in build_and_install_software
(ec_res['success'], app_log, err) = build_and_install_one(ec, init_env,
hooks=hooks)
File
"/app/easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/easybuild_framework-3.5.3-py2.7.egg/easybuild/framework/easyblock.py",
line 2684, in build_and_install_one
result = app.run_all_steps(run_test_cases=run_test_cases)
File
"/app/easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/easybuild_framework-3.5.3-py2.7.egg/easybuild/framework/easyblock.py",
line 2600, in run_all_steps
self.run_step(step_name, step_methods)
File
"/app/easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/easybuild_framework-3.5.3-py2.7.egg/easybuild/framework/easyblock.py",
line 2475, in run_step
step_method(self)()
File
"/app/easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/easybuild_easyblocks-3.5.3-py2.7.egg/easybuild/easyblocks/generic/pythonpackage.py",
line 480, in install_step
cmd = self.compose_install_command(self.installdir)
File
"/app/easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/easybuild_easyblocks-3.5.3-py2.7.egg/easybuild/easyblocks/generic/pythonpackage.py",
line 352, in compose_install_command
loc = self.src[0]['path']
IndexError: list index out of range
(at
easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/easybuild_framework-3.5.3-py2.7.egg/easybuild/main.py:161
in build_and_install_software)
--
John Dey
HPC Operations
Scientific Computing
O 206.667.4308<tel:(206)%20667-4308>
M 360.649.2731<tel:(360)%20649-2731>
E [email protected]<mailto:[email protected]>
[cid:[email protected]]
Fred Hutchinson Cancer Research Center
1100 Fairview Ave.
N<https://maps.google.com/?q=1100+Fairview+Ave.+N&entry=gmail&source=g>., Mail
Stop J3-516
Seattle, WA 98109
fredhutch.org<http://www.fredhutch.org/>
