Dear EasyBuilders,
I am trying to build scikit-image with the intel/2019b toolchain. I am basing
the easyconfig off the one I made for the foss/2019b toolchain a while ago.
During compilation, the compiler crash with the error below.
There are a number of warnings as well, I hope they are not serious. Does
anybody know what could be causing this?
Best regards
Jakob
building 'skimage.feature._cascade' extension
compiling C++ sources
C compiler: icpc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3
-Wall -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -O2
-ftree-vectorize -march=native -fno-math-errno -fPIC -O2 -xHost -ftz
-fp-speculation=safe -fp-model source
-I/home/modules/software/imkl/2019.5.281-iimpi-2019b/mkl/include -fPIC
creating build/temp.linux-x86_64-3.7/skimage/feature
compile options:
'-I/home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include
-I/home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include
-I/home/niflheim/schiotz/easybuild_experimental/broadwell/software/Python/3.7.4-GCCcore-8.3.0/include/python3.7m
-c'
extra options: '-fopenmp'
icpc: skimage/feature/_cascade.cpp
icpc: command line warning #10148: option '-Wno-unused-result' not supported
icpc: command line warning #10121: overriding '-march=native' with
'-march=native'
icpc: warning #10193: -vec is default; use -x and -ax to configure
vectorization
In file included from
/home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h(1830),
from
/home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h(12),
from
/home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h(4),
from skimage/feature/_cascade.cpp(631):
/home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h(17):
warning #1224: #warning directive: "Using deprecated NumPy API, disable it
with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
#warning "Using deprecated NumPy API, disable it with " \
^
": internal error: ** The compiler has encountered an unexpected problem.
** Segmentation violation signal raised. **
Access violation or stack overflow. Please contact Intel Support for
assistance.
compilation aborted for skimage/feature/_cascade.cpp (code 4)
error: Command "icpc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv
-O3 -Wall -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -O2
-ftree-vectorize -march=native -fno-math-errno -fPIC -O2 -xHost -ftz
-fp-speculation=safe -fp-model source
-I/home/modules/software/imkl/2019.5.281-iimpi-2019b/mkl/include -fPIC
-I/home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include
-I/home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include
-I/home/niflheim/schiotz/easybuild_experimental/broadwell/software/Python/3.7.4-GCCcore-8.3.0/include/python3.7m
-c skimage/feature/_cascade.cpp -o
build/temp.linux-x86_64-3.7/skimage/feature/_cascade.o -MMD -MF
build/temp.linux-x86_64-3.7/skimage/feature/_cascade.o.d -fopenmp" failed with
exit status 4
--
Jakob Schiøtz, professor, Ph.D.
Department of Physics
Technical University of Denmark
DK-2800 Kongens Lyngby, Denmark
http://www.fysik.dtu.dk/~schiotz/
