Dear John, It worked for me with foss/2019b.
Best regards Jakob -- Jakob Schiøtz, professor, Ph.D. Department of Physics Technical University of Denmark DK-2800 Kongens Lyngby, Denmark http://www.fysik.dtu.dk/~schiotz/ > On 3 Feb 2020, at 18.00, Dey, John F <[email protected]> wrote: > > scikit-image is failing with foss/2019b also. I think the latest release is > buggy > > Sent from my iPhone > >> On Jan 29, 2020, at 11:33 AM, Jakob Schiøtz <[email protected]> wrote: >> >> Dear EasyBuilders, >> >> I am trying to build scikit-image with the intel/2019b toolchain. I am >> basing the easyconfig off the one I made for the foss/2019b toolchain a >> while ago. During compilation, the compiler crash with the error below. >> >> There are a number of warnings as well, I hope they are not serious. Does >> anybody know what could be causing this? >> >> Best regards >> >> Jakob >> >> >> building 'skimage.feature._cascade' extension >> compiling C++ sources >> C compiler: icpc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 >> -Wall -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -O2 >> -ftree-vectorize -march=native -fno-math-errno -fPIC -O2 -xHost -ftz >> -fp-speculation=safe -fp-model source >> -I/home/modules/software/imkl/2019.5.281-iimpi-2019b/mkl/include -fPIC >> >> creating build/temp.linux-x86_64-3.7/skimage/feature >> compile options: >> '-I/home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include >> >> -I/home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include >> >> -I/home/niflheim/schiotz/easybuild_experimental/broadwell/software/Python/3.7.4-GCCcore-8.3.0/include/python3.7m >> -c' >> extra options: '-fopenmp' >> icpc: skimage/feature/_cascade.cpp >> icpc: command line warning #10148: option '-Wno-unused-result' not >> supported >> icpc: command line warning #10121: overriding '-march=native' with >> '-march=native' >> icpc: warning #10193: -vec is default; use -x and -ax to configure >> vectorization >> In file included from >> /home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h(1830), >> from >> /home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h(12), >> from >> /home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h(4), >> from skimage/feature/_cascade.cpp(631): >> >> /home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h(17): >> warning #1224: #warning directive: "Using deprecated NumPy API, disable it >> with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" >> #warning "Using deprecated NumPy API, disable it with " \ >> ^ >> >> ": internal error: ** The compiler has encountered an unexpected problem. >> ** Segmentation violation signal raised. ** >> Access violation or stack overflow. Please contact Intel Support for >> assistance. >> >> compilation aborted for skimage/feature/_cascade.cpp (code 4) >> error: Command "icpc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv >> -O3 -Wall -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -O2 >> -ftree-vectorize -march=native -fno-math-errno -fPIC -O2 -xHost -ftz >> -fp-speculation=safe -fp-model source >> -I/home/modules/software/imkl/2019.5.281-iimpi-2019b/mkl/include -fPIC >> -I/home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include >> >> -I/home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include >> >> -I/home/niflheim/schiotz/easybuild_experimental/broadwell/software/Python/3.7.4-GCCcore-8.3.0/include/python3.7m >> -c skimage/feature/_cascade.cpp -o >> build/temp.linux-x86_64-3.7/skimage/feature/_cascade.o -MMD -MF >> build/temp.linux-x86_64-3.7/skimage/feature/_cascade.o.d -fopenmp" failed >> with exit status 4 >> >> >> >> -- >> Jakob Schiøtz, professor, Ph.D. >> Department of Physics >> Technical University of Denmark >> DK-2800 Kongens Lyngby, Denmark >> https://urldefense.proofpoint.com/v2/url?u=http-3A__www.fysik.dtu.dk_-7Eschiotz_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=3TR-iteG1SyRqQ5yubQg-_2KIAToz9bj5dZrRdW36Hc&m=Ga2Iu1Oez3C2aL0v-V1JfWimy9WtQVUzXr_Z4U5QoWw&s=4vHXCr87RGOa2FGj9wWTde2rlaUQv-cexYjtwZYC4mI&e= >> >> >> >>
