scikit-image is failing with foss/2019b also. I think the latest release is buggy
Sent from my iPhone > On Jan 29, 2020, at 11:33 AM, Jakob Schiøtz <[email protected]> wrote: > > Dear EasyBuilders, > > I am trying to build scikit-image with the intel/2019b toolchain. I am > basing the easyconfig off the one I made for the foss/2019b toolchain a while > ago. During compilation, the compiler crash with the error below. > > There are a number of warnings as well, I hope they are not serious. Does > anybody know what could be causing this? > > Best regards > > Jakob > > > building 'skimage.feature._cascade' extension > compiling C++ sources > C compiler: icpc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 > -Wall -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -O2 > -ftree-vectorize -march=native -fno-math-errno -fPIC -O2 -xHost -ftz > -fp-speculation=safe -fp-model source > -I/home/modules/software/imkl/2019.5.281-iimpi-2019b/mkl/include -fPIC > > creating build/temp.linux-x86_64-3.7/skimage/feature > compile options: > '-I/home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include > > -I/home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include > > -I/home/niflheim/schiotz/easybuild_experimental/broadwell/software/Python/3.7.4-GCCcore-8.3.0/include/python3.7m > -c' > extra options: '-fopenmp' > icpc: skimage/feature/_cascade.cpp > icpc: command line warning #10148: option '-Wno-unused-result' not > supported > icpc: command line warning #10121: overriding '-march=native' with > '-march=native' > icpc: warning #10193: -vec is default; use -x and -ax to configure > vectorization > In file included from > /home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h(1830), > from > /home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h(12), > from > /home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h(4), > from skimage/feature/_cascade.cpp(631): > > /home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h(17): > warning #1224: #warning directive: "Using deprecated NumPy API, disable it > with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" > #warning "Using deprecated NumPy API, disable it with " \ > ^ > > ": internal error: ** The compiler has encountered an unexpected problem. > ** Segmentation violation signal raised. ** > Access violation or stack overflow. Please contact Intel Support for > assistance. > > compilation aborted for skimage/feature/_cascade.cpp (code 4) > error: Command "icpc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv > -O3 -Wall -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -O2 > -ftree-vectorize -march=native -fno-math-errno -fPIC -O2 -xHost -ftz > -fp-speculation=safe -fp-model source > -I/home/modules/software/imkl/2019.5.281-iimpi-2019b/mkl/include -fPIC > -I/home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include > > -I/home/niflheim/schiotz/easybuild_experimental/broadwell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include > > -I/home/niflheim/schiotz/easybuild_experimental/broadwell/software/Python/3.7.4-GCCcore-8.3.0/include/python3.7m > -c skimage/feature/_cascade.cpp -o > build/temp.linux-x86_64-3.7/skimage/feature/_cascade.o -MMD -MF > build/temp.linux-x86_64-3.7/skimage/feature/_cascade.o.d -fopenmp" failed > with exit status 4 > > > > -- > Jakob Schiøtz, professor, Ph.D. > Department of Physics > Technical University of Denmark > DK-2800 Kongens Lyngby, Denmark > https://urldefense.proofpoint.com/v2/url?u=http-3A__www.fysik.dtu.dk_-7Eschiotz_&d=DwIGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=3TR-iteG1SyRqQ5yubQg-_2KIAToz9bj5dZrRdW36Hc&m=Ga2Iu1Oez3C2aL0v-V1JfWimy9WtQVUzXr_Z4U5QoWw&s=4vHXCr87RGOa2FGj9wWTde2rlaUQv-cexYjtwZYC4mI&e= > > > >
