Dear list,
I wanted to create an EB file for EMU:
http://www.popgen.dk/software/index.php/EMU
First of all, the EMU git repo doesn't provide a tag with the latest
version, this is why I hardcoded the download path, maybe I can do that
in a better way.
Second, to install the Python code, I should execute the following:
python setup.py build_ext --inplace
Is there an easyblock that can do that? I tried with a simple
PythonPackage easyblock but it
doesn't work (no error, but the python files aren't there.)
This is my current EB file:
easyblock = 'PythonPackage'
name = 'EMU'
version = '0.66'
versionsuffix = '-Python-%(pyver)s'
homepage = 'http://www.popgen.dk/software/index.php/EMU'
description = """EMU infers population structure in the presence of missingness
and works for both haploid,
psuedo-haploid and diploid genotype datasets
"""
toolchain = {'name': 'foss', 'version': '2019b'}
source_urls = ['https://github.com']
sources = ['Rosemeis/emu/archive/a6148ec9edefee19df0fcb6dc0a8272b9e5c96bc.zip']
dependencies = [
('Python', '3.7.4'),
('SciPy-bundle', '2019.10', versionsuffix),
]
download_dep_fail = True
use_pip = False
options = {'modulename': False }
moduleclass = 'bio'
Thanks for you help, best
Yann
