Dear Yann,
On 05/11/2020 17:46, Yann Sagon wrote:
Dear list,
I wanted to create an EB file for EMU:
http://www.popgen.dk/software/index.php/EMU
First of all, the EMU git repo doesn't provide a tag with the latest
version, this is why I hardcoded the download path, maybe I can do that
in a better way.
Second, to install the Python code, I should execute the following:
python setup.py build_ext --inplace
Is there an easyblock that can do that? I tried with a simple
PythonPackage easyblock but it
doesn't work (no error, but the python files aren't there.)
The easiest way to achieve this is by changing the installation command
via 'preinstallopts', something like this:
preinstallopts = "python setup.py build_ext --inplace && "
I recommend still trying with "use_pip = True", that should work I think
(and if it doesn't try without pip, but I doubt that'll help).
"eb --trace" is your friend to reveal what EasyBuild is running while
it's doing it (see
https://easybuild.readthedocs.io/en/latest/Tracing_progress.html).
regards,
Kenneth
This is my current EB file:
easyblock = 'PythonPackage'
name = 'EMU'
version = '0.66'
versionsuffix = '-Python-%(pyver)s'
homepage = 'http://www.popgen.dk/software/index.php/EMU'
description = """EMU infers population structure in the presence of missingness
and works for both haploid,
psuedo-haploid and diploid genotype datasets
"""
toolchain = {'name': 'foss', 'version': '2019b'}
source_urls = ['https://github.com']
sources = ['Rosemeis/emu/archive/a6148ec9edefee19df0fcb6dc0a8272b9e5c96bc.zip']
dependencies = [
('Python', '3.7.4'),
('SciPy-bundle', '2019.10', versionsuffix),
]
download_dep_fail = True
use_pip = False
options = {'modulename': False }
moduleclass = 'bio'
Thanks for you help, best
Yann
