Hi,

Starting from 

  Subread-2.0.0-GCC-8.3.0.eb

I updated the package to 2.0.1 and changed the compiler version to
10.2.0 to build:

  Subread-2.0.1-GCC-10.2.0.eb

However, this fails with multiple errors all like the following:

  /trinity/shared/easybuild/software/binutils/2.35-GCCcore-10.2.0/bin/ld.gold: 
error: core-junction.o: multiple definition of 'replica_index'
  /trinity/shared/easybuild/software/binutils/2.35-GCCcore-10.2.0/bin/ld.gold: 
core.o: previous definition here

There is a Debian bug report which mentions a similar issue

  https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=957846

Regarding the solutions given there, I can confirm that building with
GCC 9.2.0 works, however when

  export CC=gcc-10 CXX=g++-10

is set, as suggested in the bug report, the build fails with the same
error as above.

Is this a known problem with GCC 10?

Cheers,

Loris
 
-- 
Dr. Loris Bennett (Hr./Mr.)
ZEDAT, Freie Universität Berlin         Email [email protected]

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