Ciao Roberto, Roberto Scipioni <[email protected]> writes: > File "<frozen importlib._bootstrap>", line 1050, in _gcd_import > File "<frozen importlib._bootstrap>", line 1027, in _find_and_load > File "<frozen importlib._bootstrap>", line 992, in _find_and_load_unlocked > File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed > File "<frozen importlib._bootstrap>", line 1050, in _gcd_import > File "<frozen importlib._bootstrap>", line 1027, in _find_and_load > File "<frozen importlib._bootstrap>", line 992, in _find_and_load_unlocked > File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed > File "<frozen importlib._bootstrap>", line 1050, in _gcd_import > File "<frozen importlib._bootstrap>", line 1027, in _find_and_load > File "<frozen importlib._bootstrap>", line 992, in _find_and_load_unlocked > File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed > File "<frozen importlib._bootstrap>", line 1050, in _gcd_import > File "<frozen importlib._bootstrap>", line 1027, in _find_and_load > File "<frozen importlib._bootstrap>", line 1004, in _find_and_load_unlocked > ModuleNotFoundError: No module named 'poetry' > > (at easybuild/tools/run.py:681 in parse_cmd_output) > == 2023-11-06 15:16:45,929 build_log.py:267 INFO ... (took 3 secs) > > ========================================= > > Have you seen this error before? > I know it can be fixed by installing poetry (pip install ....) under normal > circumstances but in this case? > Any idea?
I don't think poetry should appear in this context. Are you sure that your environment is clean? Are you using a dedicated, minimalistic account for building software, rather than a personal account, which might, say, have some fancy stuff going on in .bashrc? Cheers, Loris > Many thanks > Roberto > > Il lunedì 6 novembre 2023 10:19:11 GMT, Loris Bennett > <[email protected]> ha scritto: > > Roberto Scipioni <[email protected]> writes: > >> Dear Sir or Madam, >> >> I have been trying to install alphafold using Easybuild on Centos 7/8 >> using eb 4.5 4.6 4.8.1 using different Toolchains, different >> architectures, ....etc to no avail >> >> It stops systematically at Tensorflow/Bazel installation and/or in some >> cases when attempting to install Alphafold at the repo section >> giving errors about incomplete downloads / wrong EOF etc. > > The incomplete downloads / wrong EOF happen when the download went wrong > and the half-downloaded file is still in .../easybuild/software/... when > you try again. EasyBuild will see there is a file and won't try to > download it again. You might want to use > > --force-download > > to avoid the problem. > >> I wonder whether anybody could give me any pointer on how to proceed. >> Honestly I am not sure where to start ...:-( > > I have been successful in installing TensorFlow by submitting the > following as a Slurm job to one of our GPU nodes: > > eb TensorFlow-2.11.0-foss-2022a-CUDA-11.7.0.eb --robot \ > --cuda-compute-capabilities=6.1,7.5 --buildpath=/localscratch \ > --tmpdir=/scratch/eb-build --parallel=${SLURM_CPUS_PER_TASK} --force > > We use the local drive '/localscratch' for the build to speed up > compilation and '/scratch', a large global filesystem, as 'tmpdir' to > prevent '/tmp' from overflowing. Your compute capabilities may > obviously be different. > > Cheers, > > Loris > >> Many thanks for your help >> Kind regards >> >> Roberto >> >> Dr Roberto Scipioni >> >> HPC Managed Services Specialist >> Red Oak Managed Services >> >> >> >> A red and white background with white text >> >> ________________________________________________________________________ >> >> T: +44 (0 )1242 806188 or Contact me directly M: +44 (0) 7821656925E: >> [email protected] >> >> * >> >> * >> >> Bringing innovation and best practice to the world of HPC and Cloud >> technology since 2004 >> >> A: 36 Pure Offices, Cheltenham Office Park, Hatherley Lane, Cheltenham, GL51 >> 6SH >> W: www.redoakconsulting.co.uk >> >> __________________________________________________________________________________ >> >> >> >> >> Diagram >> >> Description automatically generated >> >> Diagram >> >> Description automatically generated >> >> >> >> >> >> * >> >> * >> >> * >> >> * >> >> * >> >> Follow Us >> Linked in photo >> >> * >> >> Image result for YouTube Icon for Desktop >> >> See the source image >> >> >> The information in this e-mail is confidential and solely for the use of the >> intended recipient(s). If you receive this e-mail in error, please notify >> the sender and >> delete the e-mail from your system immediately. In such circumstances, you >> must not make any use of the e-mail or its contents. >> >> Views expressed by an individual in this e-mail do not necessarily reflect >> the views of Red Oak Consulting. >> >> Computer viruses may be transmitted by e-mail. Red Oak Consulting accepts >> no liability for any damage caused by any virus transmitted by this e-mail. > Email >> transmission cannot be guaranteed to be secure or error-free. It is >> possible that information may be intercepted, corrupted, lost, destroyed, >> arrive late or >> incomplete or contain viruses. The sender does not accept liability for any >> errors or omissions in the contents of this message, which arise as a result >> of > e-mail >> transmission. >> >> Red Oak Consulting is registered in England and Wales, Registration No. >> OC313216 Registered Office Pure Offices, Hatherley Lane, Cheltenham, GL51 6SH >> -- Dr. Loris Bennett (Herr/Mr) ZEDAT, Freie Universität Berlin
