Hi Roberto, Roberto Scipioni <[email protected]> writes:
> Thanks, > > Poetry is included though in the dependencies that TensorFlow requires... OK, that seems to be an new dependency. But you are using --robot, right? So poetry should just get installed along with the other dependencies. > I checked and the environment seems clean, nothingh in .bashrc > There may other files or dirs of the .file kind that may interfere > I will check Your environment is probably OK. I was assuming incorrectly that poetry was not a dependency. Cheers, Loris > Regards > Roberto > > Il giovedì 9 novembre 2023 10:58:04 GMT, Loris Bennett > <[email protected]> ha scritto: > > Ciao Roberto, > > Roberto Scipioni <[email protected]> writes: > >> File "<frozen importlib._bootstrap>", line 1050, in _gcd_import >> File "<frozen importlib._bootstrap>", line 1027, in _find_and_load >> File "<frozen importlib._bootstrap>", line 992, in _find_and_load_unlocked >> File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed >> File "<frozen importlib._bootstrap>", line 1050, in _gcd_import >> File "<frozen importlib._bootstrap>", line 1027, in _find_and_load >> File "<frozen importlib._bootstrap>", line 992, in _find_and_load_unlocked >> File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed >> File "<frozen importlib._bootstrap>", line 1050, in _gcd_import >> File "<frozen importlib._bootstrap>", line 1027, in _find_and_load >> File "<frozen importlib._bootstrap>", line 992, in _find_and_load_unlocked >> File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed >> File "<frozen importlib._bootstrap>", line 1050, in _gcd_import >> File "<frozen importlib._bootstrap>", line 1027, in _find_and_load >> File "<frozen importlib._bootstrap>", line 1004, in _find_and_load_unlocked >> ModuleNotFoundError: No module named 'poetry' >> >> (at easybuild/tools/run.py:681 in parse_cmd_output) >> == 2023-11-06 15:16:45,929 build_log.py:267 INFO ... (took 3 secs) >> >> ========================================= >> >> Have you seen this error before? >> I know it can be fixed by installing poetry (pip install ....) under normal >> circumstances but in this case? >> Any idea? > > I don't think poetry should appear in this context. Are you sure that > your environment is clean? Are you using a dedicated, minimalistic > account for building software, rather than a personal account, which > might, say, have some fancy stuff going on in .bashrc? > > Cheers, > > Loris > >> Many thanks >> Roberto >> >> Il lunedì 6 novembre 2023 10:19:11 GMT, Loris Bennett >> <[email protected]> ha scritto: >> >> Roberto Scipioni <[email protected]> writes: >> >>> Dear Sir or Madam, >>> >>> I have been trying to install alphafold using Easybuild on Centos 7/8 >>> using eb 4.5 4.6 4.8.1 using different Toolchains, different >>> architectures, ....etc to no avail >>> >>> It stops systematically at Tensorflow/Bazel installation and/or in some >>> cases when attempting to install Alphafold at the repo section >>> giving errors about incomplete downloads / wrong EOF etc. >> >> The incomplete downloads / wrong EOF happen when the download went wrong >> and the half-downloaded file is still in .../easybuild/software/... when >> you try again. EasyBuild will see there is a file and won't try to >> download it again. You might want to use >> >> --force-download >> >> to avoid the problem. >> >>> I wonder whether anybody could give me any pointer on how to proceed. >>> Honestly I am not sure where to start ...:-( >> >> I have been successful in installing TensorFlow by submitting the >> following as a Slurm job to one of our GPU nodes: >> >> eb TensorFlow-2.11.0-foss-2022a-CUDA-11.7.0.eb --robot \ >> --cuda-compute-capabilities=6.1,7.5 --buildpath=/localscratch \ >> --tmpdir=/scratch/eb-build --parallel=${SLURM_CPUS_PER_TASK} --force >> >> We use the local drive '/localscratch' for the build to speed up >> compilation and '/scratch', a large global filesystem, as 'tmpdir' to >> prevent '/tmp' from overflowing. Your compute capabilities may >> obviously be different. >> >> Cheers, >> >> Loris >> >>> Many thanks for your help >>> Kind regards >>> >>> Roberto >>> >>> Dr Roberto Scipioni >>> >>> HPC Managed Services Specialist >>> Red Oak Managed Services >>> >>> >>> >>> A red and white background with white text >>> >>> ________________________________________________________________________ >>> >>> T: +44 (0 )1242 806188 or Contact me directly M: +44 (0) 7821656925E: >>> [email protected] >>> >>> * >>> >>> * >>> >>> Bringing innovation and best practice to the world of HPC and Cloud >>> technology since 2004 >>> >>> A: 36 Pure Offices, Cheltenham Office Park, Hatherley Lane, Cheltenham, >>> GL51 6SH >>> W: www.redoakconsulting.co.uk >>> >>> __________________________________________________________________________________ >>> >>> >>> >>> >>> Diagram >>> >>> Description automatically generated >>> >>> Diagram >>> >>> Description automatically generated >>> >>> >>> >>> >>> >>> * >>> >>> * >>> >>> * >>> >>> * >>> >>> * >>> >>> Follow Us >>> Linked in photo >>> >>> * >>> >>> Image result for YouTube Icon for Desktop >>> >>> See the source image >>> >>> >>> The information in this e-mail is confidential and solely for the use of >>> the intended recipient(s). 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